AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01865 ATGGATGAAGTACCAGGAACCACAGGAACGAGTGCAGGATTCGCTTTGAGGCTTGGTCAGACCATTTTTTCATCCGCTTCGCTTCTCTTTATGTCGTTTGGTGGTCAGTTTTATAGCTACACATCCTTCTGTTTTTTGGTGACAATTATGGGCTTGCTTATTCCTTGGAGTTTCGCTTTGGCACTGCTTGATGGATACTCTGTGCTAAGAACATGCCCAATTCGACAAAAGGGGACACTTTTAATTATAGTAATAGGAGATTGGATGTTAGCGACCCTCACACTGGGTGCAGCCTCATCGGCAGCAAGCGTGATGAATATCTTGCTTACCGCAGATGGTTTCGTCTGCCCTCCAAATGTATGTAGCCGATATATGCTTTCTGCCATTTTCGCGTTCTTGTCATGGTTCTTGTCTATGACATCTTCTCTGTTCAATCTTTGGCTTCTTCCATCATTGTGA 459 44.23 MDEVPGTTGTSAGFALRLGQTIFSSASLLFMSFGGQFYSYTSFCFLVTIMGLLIPWSFALALLDGYSVLRTCPIRQKGTLLIIVIGDWMLATLTLGAASSAASVMNILLTADGFVCPPNVCSRYMLSAIFAFLSWFLSMTSSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01865 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Ecan3g01865 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01865 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29684684 Ecan8g00246 Ecan-Chr8:2882203 dispersed
Ecan Ecan-Chr2:33726214 Ecan3g01865 Ecan-Chr3:29684684 wgd