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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01869 ATGGGCATATGTGCATCAATTCAATCTTCAAAAAACCAACAAACATTTTTAATCACCAATGGCCCAAAATCATCATCAACAACAACAACAAAAGTGATCAACTCAATAGATGGGAAGCTACAAGAATATAGGCAACCAATCAAAGCCCGCCACGTATTATCCGACCAATTACCCAACAACACAAACTACTTCCTATGTAATTCCGAAGACATGTTTGTCAATTGTCACGTGCCACACGTGCCAGAAGATGAAGATCTCCAATTGGGTCAAATATATTTTCTTATGCCAGTTTCAAAATCTTTAAAACCAATTTCTTTACAAGAACTTTGTGTGTTGGCGATTAAAGCAAGTTTGGCTCTTAAAAAAAATGAAGAGATAACGAAGAGGACGACGTCGTTTAGTGGACTACGTAAAAGGAATGGCAAATTAGTAAAGAGATCATCAAATGAGAGGGTGGATTTCCAGTTGGCGTTGAAAAAACTTGCATGA 489 37.22 MGICASIQSSKNQQTFLITNGPKSSSTTTTKVINSIDGKLQEYRQPIKARHVLSDQLPNNTNYFLCNSEDMFVNCHVPHVPEDEDLQLGQIYFLMPVSKSLKPISLQELCVLAIKASLALKKNEEITKRTTSFSGLRKRNGKLVKRSSNERVDFQLALKKLA 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01869 162 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 27 142 - -
Ecan3g01869 162 Pfam PADRE domain 1 142 IPR025322 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01869 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84764 Ecan3g01869 Ecan5g01408
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29713721 Ecan6g02090 Ecan-Chr6:31956502 dispersed
Ecan Ecan-Chr3:29713721 Ecan5g01408 Ecan-Chr5:27502903 transposed