AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01871 ATGGAGCTTCGGTCTATTCAATCTCCATTACTCAGTAGCATTCCTACAACAAAAACATTATGTTACAATAACCAACTTAGTAGTAGCAGTAGTAGTAGTATTTCTTTTGGTTCCAAAAGAACTGTTCAGTCAAATGTTGTCAAACATAGATCTCTTCAGTTCGATGTTCGAGCCTCAGCAACAATTAGTGTGCAGCCTGCTGAAACCAAATCAAAAGATGGTGAAAAAGACGGAAATGTCATCTTTGTAGCTGGAGCAACTGGAAAAGTTGGTTCACGAACAGTAAGGGAGCTTTTGAAATTGGGATTTAATGTTCGAGCTGGTGTACGAAGTATTCAAAAAGCAGAATCTTTGGTGAAAAGCGTAGAGCAAATGAAACTTGATGAAGCATTATCTGACGGAAGTCAGCCTATAGAGAAGCTTCAACTTGTGGAATGTGACTTGGAGAAACCGGAGCAGATTAAGGGGGCATTGGGCAGTGCTTCAATCGTTATATGTTGCATTGGGGCAAGCGAAAAGGAGATATTTGATGTTACGGGACCTTACCGAATTGACTTCCTAGCAACAAAAAACCTTATTGATGCAGCTGCTGCTGCAAAGGCAAAACAGTTTATTTTGGTTACTTCTTTAGGTACAAACAAGTTTGGTTTTCCTGCTGCTGTCTTAAATTTGTTTTGGGGAGTCCTATGCTGGAAAAGGAAGGCTGAAGAAGCACTGCTTGCTAGTGGGATTCCTTACACTATAGTGAGACCTGGAGGCATGGAGCGTCCTACAGATACTTTTAAGGAAACACATAATCTTACACTTGCTATGGAAGATACTTTATTTGGTGGTCTTGTATCTAATCTCCAGGTGGCAGAACTCCTTGCCTTTATGGCCAAAAACCCCACTCTCTCATATTGTAAAGTAGTGGAAGTAGTTGCAGAAACAACGGCACCATTGACCCCCATGGGTGACCTCCTAACAAAAATACCACCTAAACGTGTTGTACCTTCCCCGCCCAAGGAACCAGAAACTCCCAAAGAACCACAAGCTCCCAAAGAACCAGAAGCCAGCAAAGAACCCGAGCCTGTTTCTAAGACTGAAAGCATTGCCGCAGAAACACAATCAGAGACAAAACCAGCTTCAACAAGGCCACTCTCTCCATATACAATGTATGAAGGTCTGAAACCCCCTGCATCCCCCATTCCGACAGCACCTGGCGGCAGTAAGGTGGTAGTTGAAGCAGGATCAGCTCCCAAAGAACCAGAAGCCAGCAAAGAACCCGAGCCTGTTTTTAAGACTGAAAGCGTTGCCACAGAAACACAATCGGAGACAAAACCAGCTTCAACAAGGCCACTCTCCCCGTATACCATGTATGAAGGTCTAAAACCGCCTGCATCCCCTATTCCGACAGCACCTGGCAGCAGTAAGGTGGTAGTTGAAGCAGTATCAGCGCCGCCTACTGATTCTGAACTTAGCATAAAGTCGGAAACCACAGCTATCACATCTGAACCTGCACCAGAGGCTGCAGTATCAGAAACAACCAGGCCTCTATCTCCTTACACTGCATATGACAATTTGAAGCCCCCTACATCACCATCTCCAAGTACCCCGTCAGTATCACCACCACCACCAGTGTCTGTAGACAATGGGTCTCCCATTACTTCCGCACCAGAGAATCCAACAGTGAAGCCAAGGCCACTTTCACCTTATCACATGTACGAAAACTTGAAGCCTCCAACGTCTCCCATTCCATCCACTCCATAA 1749 44.88 MELRSIQSPLLSSIPTTKTLCYNNQLSSSSSSSISFGSKRTVQSNVVKHRSLQFDVRASATISVQPAETKSKDGEKDGNVIFVAGATGKVGSRTVRELLKLGFNVRAGVRSIQKAESLVKSVEQMKLDEALSDGSQPIEKLQLVECDLEKPEQIKGALGSASIVICCIGASEKEIFDVTGPYRIDFLATKNLIDAAAAAKAKQFILVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDTFKETHNLTLAMEDTLFGGLVSNLQVAELLAFMAKNPTLSYCKVVEVVAETTAPLTPMGDLLTKIPPKRVVPSPPKEPETPKEPQAPKEPEASKEPEPVSKTESIAAETQSETKPASTRPLSPYTMYEGLKPPASPIPTAPGGSKVVVEAGSAPKEPEASKEPEPVFKTESVATETQSETKPASTRPLSPYTMYEGLKPPASPIPTAPGSSKVVVEAVSAPPTDSELSIKSETTAITSEPAPEAAVSETTRPLSPYTAYDNLKPPTSPSPSTPSVSPPPPVSVDNGSPITSAPENPTVKPRPLSPYHMYENLKPPTSPIPSTP 582
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01871 582 CDD SDR-a5 81 310 - -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 340 357 - -
Ecan3g01871 582 Gene3D - 79 325 - -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 362 379 - -
Ecan3g01871 582 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 581 IPR044719 -
Ecan3g01871 582 FunFam Protein TIC 62, chloroplastic 77 327 - -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 525 543 - -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 483 524 - -
Ecan3g01871 582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 308 IPR036291 -
Ecan3g01871 582 Pfam NAD(P)H-binding 85 296 IPR016040 -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 316 582 - -
Ecan3g01871 582 MobiDBLite consensus disorder prediction 429 446 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01871 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29722018 Ecan9g01026 Ecan-Chr9:9542988 dispersed