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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01882 ATGGGCTCTAATTGGGTTCTTTTCCTTATTCTTACGCTGATACTTGCAGAAGGAGATGGAGCTAATGTCATAAGACTCAATACCATGGAAAATAATGATCATGATCTCAATCATCATCATCATGATCATATGCATCAACATGATCATGGCCATAATCCATCTTCCTCAGATAAAAAAGACCCTCAACTTATGGTTTTCTACATGTTACAAGATCTAAAAGTAGGTGAACTTATGTCAATCCACTTCCCAAATAGACACCTTTCCTCATCCCAAATATTGTCCAAACAAGAAGCAAATAATATCCCTTTTTCGTTTGCCGAATTCCCAAACCTCCTTCGGTTATTCGGTTTTTCACAAGGCTCGCCACAAGCCATAGCCATGGAAAGCACACTCAAAGAATGTGAAGTCAAGCCCATTAAGGGTGAGACCAAATTTTGTGCAACTTCAATGGAATCCGTGCACGATTTTGCACAAAACATTTTTGGACAAAATACTCAATTCAAAACTTTGACCACACACCACTTCAAAAATCCGCCAAGTGGACTTTTACAAAAATACAAAGTTATTGAAATCTCACAAAACATACCTTCACCAAAATTAGTAGCTTGTCACACCATGCCATACCCATATGCGGTGTTCTATTGCCATAGCCAAGAAAGCGAAAACAAAGTGCTAATGGTGTCTTTAGAAGGCGAAGATGGTGATTTGGTCGAAGCATTGAGTGTTTGTCACATGGATACGTCTCATTGGAGCCCGAACCATGTCTCGTTTGGTGTCCTTGGAGTCAAGCCAGGAACCACGTCGGTCTGCCACTTCTTTCCTAGCGATCATTTCGTGTTCATACCTACGTCCGCAACGATATGA 864 40.62 MGSNWVLFLILTLILAEGDGANVIRLNTMENNDHDLNHHHHDHMHQHDHGHNPSSSDKKDPQLMVFYMLQDLKVGELMSIHFPNRHLSSSQILSKQEANNIPFSFAEFPNLLRLFGFSQGSPQAIAMESTLKECEVKPIKGETKFCATSMESVHDFAQNIFGQNTQFKTLTTHHFKNPPSGLLQKYKVIEISQNIPSPKLVACHTMPYPYAVFYCHSQESENKVLMVSLEGEDGDLVEALSVCHMDTSHWSPNHVSFGVLGVKPGTTSVCHFFPSDHFVFIPTSATI 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01882 287 SMART BURP-2 64 283 IPR004873 -
Ecan3g01882 287 MobiDBLite consensus disorder prediction 34 57 - -
Ecan3g01882 287 Pfam BURP domain 65 281 IPR004873 -
Ecan3g01882 287 ProSiteProfiles BURP domain profile. 66 283 IPR004873 -
Ecan3g01882 287 MobiDBLite consensus disorder prediction 34 56 - -
Ecan3g01882 287 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 35 283 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01882 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:29846268 Ecan9g02871 Ecan-Chr9:35389118 dispersed
Ecan Ecan-Chr3:29816392 Ecan3g01882 Ecan-Chr3:29846268 tandem