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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01917 ATGGCGGCTGCTTCATCTTCTTCACTTCATCTCCAATCCTTATATTTCACCAAACCCATTAACAATACTTCAATCCAAACAAAACCCACATCTCAAATCTCCTTAAAATCCTTAAAGTCCAAAACTTTAAGCATCAAATCAGTCCTATCACAAACCCCCCAAAAAACCCAGAAATTTAACCATTGTTTTACCAAGAAAGATGATGGCTTTTTGTATGTTGAAGGACTTAAAGTCCAAGAAATCATGGAAAGTGTTGAAGAAAAAAGGCCATTTTATCTTTATAGTAAACCCCAAATTACAAGAAATGTTGAGGCTTATAAAGATGCTTTGGAGGGTTTGAATGATTCCATTATTGGTTATGCTATTAAGGCTAATAATAATTTTGTGGTTTTGAAACATTTGAGAAGTTTGGGATGTGGGGCTGTTTTGGTTAGTGGAAATGAACTTAGGTTGGCACTTCAAGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGGAAGCTTTTGGAAGATCTTGTTCTTGCTGCTCAAGAAGGTGTATTTGTTAATATAGATAGTGAATTTGATTTGGATAACATTGTATCGGCTGCTAGAATTGCTGGAAAGAAGGTTAATGTACTGCTTCGGATCAATCCAGATGTTGACCCTCAGGTTCATCCTTATGTTGCAACGGGGAATAAGAACTCCAAATTTGGTATCAGAAACGAGAAGTTGCAATGGTTTTTAGATGCGGTGAAGTCTTATCCTGATGAACTGAAGCTAGTTGGGGCTCATTGCCATCTTGGGTCCACCATTACCAAGGTTGACATTTTCAGAGATGCTGCTGCCATCATGGTGAAGTTCATTGATGAAATTCGAGCCCAAGGGTTTGAAATTAATTACTTGAATATTGGAGGTGGTCTTGGGATTGACTATTACCATACTGGTACCGTCCTTCCTACACCCAGAGATCTGATCGACACAGTACGGGAGCTAGTCAAGTCTCGAAACCTTACTCTAATCATTGAACCAGGAAGGTCACTGATAGCAAATACTTGCTGCTTGGTTAATCGTGTGACTGGTGTAAAAACGAACGGCACAAAAAACTTCATTGTGATTGATGGCAGCATGGCCGAGCTTATCCGTCCAAGCCTGTACGATGCTTATCAACACATAGAACTGGTTTCTCCTCCGCCACCTGATTCTCCTGTTACAACATTTGATGTGGTGGGCCCGGTTTGTGAATCAGCTGATTTTTTGGGGAAGAACAGGGACCTTCCTGCACCAGCCAGGGGTGCTGGGCTTGTAGTTCATGATGCAGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCTGAGTATTGGGTTGAAGAAGATGGATCGCTAGCCAAAATCAGGCACGGGGAGACTTTTGATGATCATATGAGATTCTTTGAGGGACTCTAG 1449 41.27 MAAASSSSLHLQSLYFTKPINNTSIQTKPTSQISLKSLKSKTLSIKSVLSQTPQKTQKFNHCFTKKDDGFLYVEGLKVQEIMESVEEKRPFYLYSKPQITRNVEAYKDALEGLNDSIIGYAIKANNNFVVLKHLRSLGCGAVLVSGNELRLALQAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRAQGFEINYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVKSRNLTLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDSPVTTFDVVGPVCESADFLGKNRDLPAPARGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSLAKIRHGETFDDHMRFFEGL 482
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01917 482 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
Ecan3g01917 482 Gene3D Alanine racemase 96 342 IPR029066 -
Ecan3g01917 482 SUPERFAMILY Alanine racemase C-terminal domain-like 321 477 IPR009006 GO:0003824(InterPro)
Ecan3g01917 482 CDD PLPDE-III-DapDC 90 457 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 289 304 IPR022657 -
Ecan3g01917 482 NCBIfam diaminopimelate decarboxylase 65 476 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 PRINTS Diaminopimelate decarboxylase signature 363 381 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 PRINTS Diaminopimelate decarboxylase signature 446 468 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 PRINTS Diaminopimelate decarboxylase signature 138 155 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 PRINTS Diaminopimelate decarboxylase signature 226 235 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 Hamap Diaminopimelate decarboxylase [lysA]. 75 480 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Ecan3g01917 482 PANTHER DIAMINOPIMELATE DECARBOXYLASE 54 479 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Ecan3g01917 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 335 354 IPR000183 GO:0003824(InterPro)
Ecan3g01917 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824(InterPro)
Ecan3g01917 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 253 266 IPR000183 GO:0003824(InterPro)
Ecan3g01917 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 436 449 IPR000183 GO:0003824(InterPro)
Ecan3g01917 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824(InterPro)
Ecan3g01917 482 FunFam Diaminopimelate decarboxylase 323 476 - -
Ecan3g01917 482 FunFam Diaminopimelate decarboxylase 96 342 - -
Ecan3g01917 482 SUPERFAMILY PLP-binding barrel 89 346 IPR029066 -
Ecan3g01917 482 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 78 476 IPR009006 GO:0003824(InterPro)
Ecan3g01917 482 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 98 345 IPR022644 GO:0003824(InterPro)
Ecan3g01917 482 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 346 436 IPR022643 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01917 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30177998 Ecan8g02198 Ecan-Chr8:33728035 dispersed