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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01945 ATGACTCAAATTAGTCGAAAAATGTGGGGATTTCAACTAAAGAGAACGATCATATGGCGTGTAGCTTTTCTTAGGCGATGTGCTAGATCTTTGTGGCACCAAATTCTTGGTTGTTGGATTGGGAAATCTATCCGATACCGGCAATTGTTACAATCAGGTTCGGGTCATTTGATTCCAACCACGTCTCATCGTCGTAGTCCTCGAGCCGAGGGGACAACGAAGATGAATGACAAGTTTCCGTCAGGAGAAATGACGGAATCTTCTGGTGAAATAACATATTCTAGTGGCTCTGATCATGATCAAGATGTTTCTGATTTGGTGGCTTTGAAGATTACTTTGTTAGGTGATCACCATATTGGCAAAACAAGCTTCTTGGCAAAGTATGTTGGAAAAGAAAAGAATCAAGAAGAAAAACAAGCAACCAAAGGAATGAATCATATGGATAAAACATTGTGTGTTAGAGGAGCCAGGATTTCCTACAGCTTATGGGAAGTGGGTGGTGATGAATTTTGTCCAGATGGCGATTCGAGTGCTTCAATTCCTACAGCTTGTAAAGACTCTGTGGCTATGTTATTCATGTTTGATCTAACGAGTCGTCGTACACTAAATAATGTAATCAATTGGCATCAACAAGCTAGGAATCATAATCAGACGGCGATTCCTGTCATGGTTGGTAGTAAGTTCGACGAATTTGTACAACTTCCGTTAGATTTACAATGGGAGATCGCAAGTCAGGCAAGGGCCTATGCCAAAGCTATAAACGCGACATTGTTCTTCTCAAGTGCTTCTTACAACATAAACGTAAATAAAATATTTAAGTTTGTAACTGCAAAGCTTTTCGACTTGCCATGGACTCTAGAACGTAACCTGACAGTCGGCGAGCCTATTATTGATTTCTAG 900 40.44 MTQISRKMWGFQLKRTIIWRVAFLRRCARSLWHQILGCWIGKSIRYRQLLQSGSGHLIPTTSHRRSPRAEGTTKMNDKFPSGEMTESSGEITYSSGSDHDQDVSDLVALKITLLGDHHIGKTSFLAKYVGKEKNQEEKQATKGMNHMDKTLCVRGARISYSLWEVGGDEFCPDGDSSASIPTACKDSVAMLFMFDLTSRRTLNNVINWHQQARNHNQTAIPVMVGSKFDEFVQLPLDLQWEIASQARAYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLPWTLERNLTVGEPIIDF 299
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01945 299 Pfam Ras family 110 278 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Ecan3g01945 299 ProSiteProfiles small GTPase Rab1 family profile. 100 299 - -
Ecan3g01945 299 Gene3D - 99 288 IPR027417 -
Ecan3g01945 299 PANTHER - 107 298 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Ecan3g01945 299 MobiDBLite consensus disorder prediction 57 97 - -
Ecan3g01945 299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 291 IPR027417 -
Ecan3g01945 299 FunFam Septum-promoting GTP-binding protein 1 99 289 - -
Ecan3g01945 299 PRINTS Transforming protein P21 ras signature 217 230 - -
Ecan3g01945 299 PRINTS Transforming protein P21 ras signature 109 130 - -
Ecan3g01945 299 PRINTS Transforming protein P21 ras signature 151 173 - -
Ecan3g01945 299 PRINTS Transforming protein P21 ras signature 257 279 - -
Ecan3g01945 299 SMART rab-sub-5 109 282 - -
Ecan3g01945 299 MobiDBLite consensus disorder prediction 78 97 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01945 K07976 Rab family, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30472289 Ecan8g02449 Ecan-Chr8:35931533 dispersed
Ecan Ecan-Chr3:30472289 Ecan2g01004 Ecan-Chr2:14172830 transposed