AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01955 ATGCATATAACAGGACCTCATTCTTCATCTATTCTCCGGCGAGCTTCTAGGTCTTCCACCACCAGGCTTCAATCTTCTATCTCCTCTAACTCACCGGTATCGGCATCGGCACCGGTGTCTCCACCATCACCGTCGGCGGCGCAGCTTCGACCTTACACAACCGCATCAGCCACCTTCCGATCTCGATGGAGCCACGGCGTTGATTGGAAGTCTCCGGCGTCTCTCTCTTCTCAGATCAGAACTACTGCCTCTCCTGTTTTGGATCGATTTCACCGCACTCTCTCCACTCTCGCTTCCGAGCATGCTTTCAGTGGTATTTTGACTGGTCTCCCTAAGCCTGGAGGTGGAGAGTTTGGGAAATTCTATAGTTTGCCTGCTCTGAATGATCCAAGAGTTGACAAGCTGCCATATTCGATTAGGATACTTCTTGAATCTGCAATCCGTAATTGTGACAATTTCCAAGTCACAAAGGAAGATGTCGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAAATTCCATTCAAGCCGGCTCGTGTCTTGTTGCAGGATTTTACTGGTGTCCCAGCCGTGGTAGACCTCGCATGTATGCGTGATGCGATGAACAACCTTGGAGGGGATTCTAATAAAATTAATCCATTGGTTCCCGTGGATCTTGTGGTTGATCATTCAGTTCAAGTTGATGTTGCTAGGTCTGAGAATGCAGTACAAGCAAATATGGAACTTGAATTTCAGAGAAACCGGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCATTCCAAAACATGCTTGTGGTGCCACCTGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTTTTCAATACTAATGGGATGCTGTATCCTGATAGTGTTGTTGGAACTGATTCCCACACTACTATGATTGATGGGTTAGGTGTTGCTGGGTGGGGAGTTGGAGGAATAGAAGCAGAAGCGGCGATGCTTGGGCAGCCAATGAGTATGGTTTTGCCTGGTGTTGTTGGGTTCAAGTTATCAGGGAAACTGCAAAATGGTGTGACAGCCACTGATTTGGTTTTGACAGTCACTCAAATGTTGAGGAAGCATGGTGTTGTAGGCAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATTTCCCTTGCTGACCGGGCTACTATAGCTAACATGTCACCGGAGTATGGTGCAACTATGGGTTTCTTCCCAGTAGATCATGTTACTCTTCAATATTTGAAGTTAACTGGACGGAGTGATGATACGGTTGCTATGATCGAAGCATACTTACGTGCAAACAATATGTTTGTTGACTATAATGAGCCACAACAAGAAAGAGTCTATTCATCTTATTTAGCGCTTGATCTTTCAGAAGTGGAACCTTGTGTTTCAGGGCCAAAAAGGCCTCATGATCGAGTCCCTTTGAAGGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATCAAGTGGGATTCAAGGGATTTGCGGTACCGAAAGAGGCACAAGAAAAGGTTGTAAAATTTGATTTTCACGGACAGCCAGCAGAACTTAGGCATGGCAGTGTTGTGATTGCTGCTATTACAAGCTGCACAAATACATCAAATCCTAGTGTTATGCTTGGGGCGGGGATTGTTGCTAAAAAGGCATGTGAATTGGGCCTACAGGTGAAACCATGGGTTAAAACAAGTCTTGCTCCTGGTTCTGGAGTTGTTACAAAGTATTTGCTACAAAGTGGGTTGCAGAAGTTTTTGAATGAGCAAGGGTTTAACATTGTTGGATATGGCTGTACCACATGTATTGGTAATTCTGGGGACTTGGATGAGGCGGTTGCTACTGCTATAGCAGATAATGATGTCATTGCGTCAGCGGTTCTCTCCGGGAATAGAAACTTTGAGGGGCGTGTTCATGCTTTGACACGGGCAAACTATCTTGCATCACCTCCTCTGGTTGTTGCATATGCTCTTGCTGGCACGGTTGATATTGATTTTGAGAAGGAACCGATCGGAGTTGGAAAAGATGGCAAGGATGTTTATTTCAGGGACATATGGCCAACTAGTGAAGAAATTGCTGATGCTGTTCAATCAAGTGTTCTGCCTGAAATGTTTAAGAGTACATATAAATCCATCACCGAGGGAAATCCCATGTGGAATGACCTACCAGTCCCTGAAGCCAAGTTATATACATGGGATCCAAATTCTACCTACATTCACGAGCCACCATATTTCAAAAACATGACAATGGATCCCCCTGGGGCCCATGGCGTGAAGGATGCTTACTGCTTGCTGAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCCGCCGGAAGCATCCACAAGGATAGTCCAGCTGCAAAGTTTCTTCTTGAACGTGGCGTTGACCGCAAGGATTTCAACTCTTATGGTAGTCGACGTGGTAATGATGAGATTATGGCCCGGGGGACTTTTGCCAATATCCGCATTGTGAACAAGCTCTTAAATGGGGAAGTTGGCCCAAAGACTCTACATATTCCCACAGGAGAAAAACTTTCGGTTTTTGATGCGGCATCAAAATACAAGGCTGCTGGTCAAGATACAATTGTGTTGGCAGGAGCAGAGTATGGAAGTGGAAGCTCAAGGGATTGGGCCGCCAAGGGACCCATGTTATTGGGAGTTAAAGCAGTAATTGCAAAGAGCTTTGAGAGGATCCATAGAAGTAACTTGGTGGGAATGGGTATAATACCACTTTGTTTCAAAGCCGGTGAAGATGCAGACACCTTACAATTGACTGGTCATGAACGATATACCATTGACCTACCAAGTAACATTAGTGAGATCCGACCTGGTCAAGATGTCACTGTCACAACTGACACGGGAAAGTCATTCACGTGTACCGCCCGCTTTGACACTGAGGTGGAGTTGGAGTATTTCAATCATGGTGGGATCCTTCCATATGTTATCCGTCAACTATCGGCACAAAAATGA 2988 45.18 MHITGPHSSSILRRASRSSTTRLQSSISSNSPVSASAPVSPPSPSAAQLRPYTTASATFRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRTLSTLASEHAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNRERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLALDLSEVEPCVSGPKRPHDRVPLKDMKADWHSCLDNQVGFKGFAVPKEAQEKVVKFDFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGIVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKFLNEQGFNIVGYGCTTCIGNSGDLDEAVATAIADNDVIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKDVYFRDIWPTSEEIADAVQSSVLPEMFKSTYKSITEGNPMWNDLPVPEAKLYTWDPNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTLHIPTGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVTVTTDTGKSFTCTARFDTEVELEYFNHGGILPYVIRQLSAQK 995
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01955 995 SUPERFAMILY Aconitase iron-sulfur domain 115 729 IPR036008 -
Ecan3g01955 995 Gene3D - 693 754 - -
Ecan3g01955 995 FunFam Aconitate hydratase 756 993 - -
Ecan3g01955 995 Pfam Aconitase family (aconitate hydratase) 161 664 IPR001030 -
Ecan3g01955 995 ProSitePatterns Aconitase family signature 2. 595 608 IPR018136 -
Ecan3g01955 995 PRINTS Aconitase family signature 595 608 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 296 309 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 533 544 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 243 256 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 468 482 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 310 325 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 267 275 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 372 385 IPR001030 -
Ecan3g01955 995 PRINTS Aconitase family signature 386 399 IPR001030 -
Ecan3g01955 995 ProSitePatterns Aconitase family signature 1. 529 545 IPR018136 -
Ecan3g01955 995 Gene3D Aconitase, domain 4 757 993 IPR015928 -
Ecan3g01955 995 NCBIfam aconitate hydratase AcnA 119 991 IPR006249 -
Ecan3g01955 995 Gene3D Aconitase, domain 3 469 692 IPR015931 -
Ecan3g01955 995 CDD AcnA-IRP 182 666 - -
Ecan3g01955 995 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 99 992 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Ecan3g01955 995 CDD AcnA-IRP-Swivel 770 940 IPR044137 -
Ecan3g01955 995 SUPERFAMILY LeuD-IlvD-like 733 990 - -
Ecan3g01955 995 FunFam Aconitate hydratase 101 468 - -
Ecan3g01955 995 MobiDBLite consensus disorder prediction 1 50 - -
Ecan3g01955 995 Gene3D Aconitase, domain 3 102 468 IPR015931 -
Ecan3g01955 995 FunFam cytoplasmic aconitate hydratase 469 692 - -
Ecan3g01955 995 Pfam Aconitase C-terminal domain 793 921 IPR000573 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01955 K01681 aconitate hydratase [EC:4.2.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr5:32145514 Ecan3g01955 Ecan-Chr3:30562939 transposed
Ecan Ecan-Chr3:30562939 Ecan5g01498 Ecan-Chr5:28654711 wgd