AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01968 ATGGGATCTTTAATCAAAGCGAGCTTGCTCTTGTTTGTCTCCCTTTTACTTTTGGCAACTAGTGCATATTCGGATGGTAATGATAGATTGGTTAGAGTTGGACTTAAGAAGAGGAAAATCAACCGACTTGGTAGATATGGTGGCTCTATTTTTGGGAGGTCTAGAAGCTATTATGGCATTCGTGATAATAAAGGGGATTCAACTAGTGACACTATTCCGTTAGAAAACTACATGGATGCTCAGTATTATGGTGTGATTGGTATCGGTACTCCACCTCAAAAGTTCACTGTGATTTTCGACACTGGAAGTTCCAATCTGTGGGTGCCTTCTTCAAAGTGCCTTTTCTCGGCAGCTTGCATCTTCCACTCAAAGTATAAGTCTAGTCAATCAAGATCCTACAAGAAAAACGGGAAATCTGCTGCAATTCATTATGGAAGTGGCTCCATCACTGGTTTCTTTAGTCAAGATTCTGTCCAACTTGGTAGTCTTGTTGTTAAAGACCAGGATTTTATAGAGGCAACCAAAGAGCCTGGCCTCACATTTTTGGCAGCCAAATTTGATGGTATACTTGGCCTTGGGTTTCGAGAGATATCTGTTGGGGATGCGGTTCCTGTTTGGTACAACATGGTTGTACAAAATCTTGTACAAGAACCTGTATTTTCATTTTGGCTTAATCGTCATGTTGATGAGGGTGAAGGAGGGGAGCTTGTGTTTGGTGGGGTTGATACTCATCATTTCAAGGGTGAGCATACATACGTCCCAGTGAGCCGAAAAGGCTATTGGCAGTTCGAAATGGGTGATGTCCTGATTGGTGATAACTCAACTGGATTTTGCATCAGTGGTTGTTCTGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGCCCAACGGTTGTTATCACTGAAATTAATCAAGCAATTGGTGCTTCTGGTTTTATGAGCGAACAATGCAAGACCTTTGTTGACGAGTATGGGAGAACTATCATTGATATGTTATTAACTGAGACACAACCAGAAAGAATCTGTTCTCAGATGATGTTATGCCCCTCTATGAATAATGGTTCAGCTGATAGCAACTTGATAATTGAGAATGTGGTTGACGAGAATAATGGAAGATCATCTGGTGTAGATGATGATGAGATGTGCAATTTCTGTCAGATGGCTGTTGTTTGGATGGAAAATCAGATCAGGCGAAATGTTACTGAAGAACAAATAATTAACTATGTCGATAAGCTGTGTGATCGATTACCAAGTCCAATGGGAGCAAATGGAGTTGACTGTAATACTCTTTCCTCCTTGCCAAACATTGCATTTACAATTGGTGGTAAAATTTTCGACTTCTCCCCTGCAGAGTATATTCTGAAAGTTGGTGAGGGAGCAGCGGCGAAATGCATCAGTGGATTTACTGCATTTGATATGGCACCTCCTCGTGGACCTCTATGGATCCTGGGAGATATATTTATGGGTAAATACCATACGGTGTTTGACTATGGTAACTTACAAGTTGGGTTTGCAGAAGCAGCTTGA 1527 41.39 MGSLIKASLLLFVSLLLLATSAYSDGNDRLVRVGLKKRKINRLGRYGGSIFGRSRSYYGIRDNKGDSTSDTIPLENYMDAQYYGVIGIGTPPQKFTVIFDTGSSNLWVPSSKCLFSAACIFHSKYKSSQSRSYKKNGKSAAIHYGSGSITGFFSQDSVQLGSLVVKDQDFIEATKEPGLTFLAAKFDGILGLGFREISVGDAVPVWYNMVVQNLVQEPVFSFWLNRHVDEGEGGELVFGGVDTHHFKGEHTYVPVSRKGYWQFEMGDVLIGDNSTGFCISGCSAIADSGTSLLAGPTVVITEINQAIGASGFMSEQCKTFVDEYGRTIIDMLLTETQPERICSQMMLCPSMNNGSADSNLIIENVVDENNGRSSGVDDDEMCNFCQMAVVWMENQIRRNVTEEQIINYVDKLCDRLPSPMGANGVDCNTLSSLPNIAFTIGGKIFDFSPAEYILKVGEGAAAKCISGFTAFDMAPPRGPLWILGDIFMGKYHTVFDYGNLQVGFAEAA 508
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01968 508 Gene3D Acid Proteases 31 240 IPR021109 -
Ecan3g01968 508 Gene3D Acid Proteases 241 508 IPR021109 -
Ecan3g01968 508 SUPERFAMILY Acid proteases 10 507 IPR021109 -
Ecan3g01968 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 284 295 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Ecan3g01968 508 Pfam Eukaryotic aspartyl protease 81 507 IPR033121 -
Ecan3g01968 508 Gene3D - 312 417 - -
Ecan3g01968 508 SUPERFAMILY Saposin 313 417 IPR011001 -
Ecan3g01968 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629(InterPro)
Ecan3g01968 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 16 507 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Ecan3g01968 508 Pfam Saposin-like type B, region 2 316 348 IPR008138 -
Ecan3g01968 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Ecan3g01968 508 FunFam Lysosomal aspartic protease 68 310 - -
Ecan3g01968 508 ProSiteProfiles Peptidase family A1 domain profile. 82 505 IPR033121 -
Ecan3g01968 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 97 108 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Ecan3g01968 508 ProSiteProfiles Saposin B type domain profile. 312 352 IPR008139 -
Ecan3g01968 508 CDD phytepsin 72 506 IPR033869 GO:0004190(InterPro)
Ecan3g01968 508 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ecan3g01968 508 PRINTS Pepsin (A1) aspartic protease family signature 284 295 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ecan3g01968 508 PRINTS Pepsin (A1) aspartic protease family signature 234 247 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Ecan3g01968 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01968 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84788 Ecan3g01968 Ecan5g01502
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30726339 Ecan4g00688 Ecan-Chr4:15083213 dispersed
Ecan Ecan-Chr3:30726339 Ecan5g01502 Ecan-Chr5:28746003 wgd