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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01983 ATGAAGCTCAGGTACAAGGAAAAGAAATGGGATCCTAAAAAGATTGTTGGGTCGGGTGGAATGCCATCATCTCATTCTTCGACTGTCGTGGCACTGGCAATATCCATAGGTCTACAAGAAGGGGTTGATTCATCCGCGTTTGCCATTGCTGTTGTCCTGGCTTTTATCGTTATGTATGATGCAACTGGTGTCAGACTCCATGCTGGTCGTCAAGCTGAATTGTTGAACCAGATTGTCTGTGAATTTCCCCCGGAGCACCCTTTATCTGAATCCAGACCTCTACGTGATTCTCTTGGACACACTCCAATACAGGTAGCTGCAGGGGCTGTGTTAGGATTTATAGTGGCCTGTGTGATGAAAGTATCTGGCTAG 372 46.51 MKLRYKEKKWDPKKIVGSGGMPSSHSSTVVALAISIGLQEGVDSSAFAIAVVLAFIVMYDATGVRLHAGRQAELLNQIVCEFPPEHPLSESRPLRDSLGHTPIQVAAGAVLGFIVACVMKVSG 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01983 123 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 5 120 IPR003832 -
Ecan3g01983 123 CDD PAP2-like 3 118 - -
Ecan3g01983 123 Pfam Divergent PAP2 family 5 115 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01983 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30891433 Ecan8g02491 Ecan-Chr8:36230476 dispersed
Ecan Ecan-Chr3:30891433 Ecan3g01983 Ecan-Chr3:30891433 tandem