AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01984 ATGGCTTCGAGTTCTGAAATAGGGCTTGCAGCAGCTACAAACATACTAATGGCATTTGTTTTTTTGGTGGCATTTGCTATACTTAGGATTCAGCCGTTAAACGATAGAGTGTATTTTCCGAAATGGTATTTAAAAGGGTTAAGAAACGATCCACTTCAATCGGGTGTGTTTGTGCAGAAGTTTGTCAACTTGGATTTCAGATCATACTTGAGGTTTTTGAACTGGATGCCTGCTGCATTGCACATGCCAGAACCCGAGCTTATTGATCACGCAGGATTGGATTCGGTTGTTTACTTGAGAATTTACTTGACAGGACTTAAAATATTTGTTCCAATTGCATGCCTTGCTTTCGCGGTCTTGGTGCCGGTCAACTGGACTAATCAGACTTTGGAGCAGTCAAAATTAACATATAGTGACATTGACAAGCTTTCAATATCCAACATTCCAACCGGATCAAACAGGTTTTGGACACATATAGTCATGGCTTACGCCTTTACCTTTTGGACATGCTATATTTTGAAAAGAGAGTATGAGATAATTGCGTCAATGAGGTTGCATTTTATTGCATCAGAACAACGAAGGCCTGATCAATTTACTGTGCTCGTGAGAAATGTGCCATCAGACCCTGATGAGACAGTCAGTGAGCTTGTGGAGCACTTTTTTCTTGTCAACCATCCAGATCAGTATTTGTGTCATCAGGTCGTGAGAAATGCAAATGCACTCTCAAAATTGGTTAATGAGAAGAAAACAAAGCAAAATTGGCTTGACTACTATCAACTGAAGTATAATAGAAATAACCATTCAAAAAGGCCATCAATGAAGACTGGTTTTCTTGGCCTGCACGGTAAGAGGGTGGATGCTATTGATTATTATCAATCCGAGGTTGAGAAACTAATGAAAGAGATATGTAAAGAGAGGGAAAAGGTTATTACGAGCTCCAAATGCGTTGCTCCAGCTGCATTTGTCTCTTTTAAATCACGATGGGGTGCTGCGGTTTGTGCACAAACTGAACAATCCAGGAACCCAACTATCTGGTTAACTGAGTGGGCCCCAGAACCCCGTGATGTTTATTGGGATAATCTTGCCATTCCATTTGTTTCACTCACAATTAGAAGACTTATTATCGCCGTGGCCTTTTTCTTCCTGACGTTTTTCTTCATGATCCCAATAGCATTTGTACAGTCACTTGCAAATATTGATGGCATAGTGAAAGCAGCTCCTTTCTTGCAAGGCATTATGGAAGTGAAATTTGTGAAATCTTTCATACAAGGAGTTCTTCCAGGAATCGCTTTGAAGATCTTCCTCATTCTTCTACCTTCAATCTTGATGATGATGTCTAAGTTTGAAGGTTTCACCTCTATATCAGCTCTAGAGAGAAGATCTGCAACAAGATATTATATTTTTCAGTTTATAAATGTCTTTCTTGGGAGCATAATTACAGGGACTGCATTTCAACAGCTAAAAACCTTCATTCACCAGTCTGCAAACACTATCCCAATGACAATTGGTTCATCTATACCAATGAAAGCAACCTTCTTTATAACTTATATCATGGTCGATGGATGGGCTGGAGTTGCTGGTGAGATTCTGAGGTTAAAACCATTAATATTCTATCACTTAAAGAATTTTCTCTTGGTGAAAACCGAAAAGGACAGAGAAGAGGCAATGAATCCTGGAAGTTTGTCTTTCAACACGGGGGAACCTCAAATCCAGCTTTATTTCTTACTTGGCCTTGTTTATGCTGTTATCACCCCGATTCTGCTACCGTTTATAGTAGTTTTCTTCGCCTTGGCTTACTTGGTGTACCGTCATCAGATAATAAATGTGTATAATCAACAGTATGAGAGCGCTGGATCTTTCTGGCCAGATGTACATCGCCGCATCATAACTGCACTAATTGTATCCCAGTTGCTTTTGATGGGTCTTCTTAGCACAAAAGAAGCTGTGAATTCAACCCCATTGCTTATAGTACTCCCTGTGCTCACCATATGGTTCCATAGATTCTGTAAAGGACGGTTTGAACCAGCTTTCATTAGGTACCCTTTACAGGAGGCAATGATCAAAGATACACTAGAGCGCACAAGGGAGCCAGGTCTAAATGTCAAAGTTTATCTAGAAAATGCATACGTTCACCCAGTTTTCAATAATGAAGACAGATGGGATGGGAGTGATGATGGATTTAGTGATGAAGAGAATCCAAAAGAACCTGCCCTGGTCCCCACAAAGCGTCCTTCACGAACAAACACACCAGCACGAAGTCAACGTAGCGAGTCAACACGAACCTTGTTGTGTGTTACGGATGAAAGATCCTGTCCATAA 2319 40.49 MASSSEIGLAAATNILMAFVFLVAFAILRIQPLNDRVYFPKWYLKGLRNDPLQSGVFVQKFVNLDFRSYLRFLNWMPAALHMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFAVLVPVNWTNQTLEQSKLTYSDIDKLSISNIPTGSNRFWTHIVMAYAFTFWTCYILKREYEIIASMRLHFIASEQRRPDQFTVLVRNVPSDPDETVSELVEHFFLVNHPDQYLCHQVVRNANALSKLVNEKKTKQNWLDYYQLKYNRNNHSKRPSMKTGFLGLHGKRVDAIDYYQSEVEKLMKEICKEREKVITSSKCVAPAAFVSFKSRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTIRRLIIAVAFFFLTFFFMIPIAFVQSLANIDGIVKAAPFLQGIMEVKFVKSFIQGVLPGIALKIFLILLPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLKTFIHQSANTIPMTIGSSIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFLLVKTEKDREEAMNPGSLSFNTGEPQIQLYFLLGLVYAVITPILLPFIVVFFALAYLVYRHQIINVYNQQYESAGSFWPDVHRRIITALIVSQLLLMGLLSTKEAVNSTPLLIVLPVLTIWFHRFCKGRFEPAFIRYPLQEAMIKDTLERTREPGLNVKVYLENAYVHPVFNNEDRWDGSDDGFSDEENPKEPALVPTKRPSRTNTPARSQRSESTRTLLCVTDERSCP 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01984 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
Ecan3g01984 772 MobiDBLite consensus disorder prediction 721 772 - -
Ecan3g01984 772 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Ecan3g01984 772 MobiDBLite consensus disorder prediction 721 737 - -
Ecan3g01984 772 MobiDBLite consensus disorder prediction 742 765 - -
Ecan3g01984 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Ecan3g01984 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 8 723 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01984 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30896524 Ecan3g04101 Ecan-Chr3:47449600 dispersed
Ecan Ecan-Chr3:30896524 Ecan4g00602 Ecan-Chr4:11038205 transposed