AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01985 ATGGATTACGAGTTGAGAAGGGCTCGAGAGAAATTGGAGAAAGAGCAAAGAGATAGAAAAGAAGCAGCAAAGAAACGGATTGAAAAGGAGAAGAAAGCAAAACAAGAAGCTGCGAGTCGACGTGAAGCCATTGAAGCTGCTCAACGATCTCGCAGAATCCATGCCATTGAATCCCAGCTTAAGGCAGAGCAGCAGATGGAAGAAGATATATTTGCCGGGAGAGGAATTTCTTTCAACCGTGTGCTAGAAGCTGTACCTTTCGAGGGTGCTGGAGATAAGATCAAACTGCCAGCTTCCTGTTTTAACGATTTATCTAGTGAAGGTGCTTTTGAAAAAGGTCCTCTCCATTTTCAGCTGTCGGTAGTTCAGCAAAATGAGTCATCACAATCGCAATCAGTACCTGTTGAAAGTATACACCGAGGGTCAACCCATGCAGGGGTGTTGGAATTCACTGCAGAAGAAGGTACTGTTGGGATCCCTCCTCATATTTGGAATAACTTGTACTCGAAACAAGACCCGATGACTCCTTTAGTTGAAGTTAAGTATGTGTGGCTAGCAAAAGGAACATATGCAAAGCTTCAATCCGAAGAACTTGGGTTCTCGGATATACCCAACCATAAAGCTGTCCTTGAAACAACTCTTCGCCAACATGCAACCCTTTCTCAAGACGATGTTTTGACTGTCAAACATGGTGTGTTGACTTATCATCTGCGTGTGCTTGAACTAAAACCGTCATCAAGCGTATCTGTCCTTGAAACAGATATTGAAGTCGACATCATGGGTCCTGATTCACTTCCTGAGAAAAGCAGTCAGCATGTGCTGAAGCCACTAACTTTTGGGAAATCTGAATCTGGTGTTATCAATGAAGGAGAATACACCTACTACAAATTTTCAATAGATAATGACATTTGGAGTATAATTAAATCCGGGGATGCTGAAGTTGAAGTGAAGTTGGATTCAGAGGCAAAAGATGGGGATACCGATCTCTATCTTTCACAACACCCACTGTTATTTCCAAATACGCACCAACATGGTTGGTCTAGCCATGACGTGGGTTCCAAGTGTTTGGTTCTCAGCTCAAAAGACAACAGCTTAGGTGCAGGTATTTATAGTGTCGGTGTGTATGGCTTCAAAGGGACTACAAAATACAATCTCTTGTTAACCGTACAAGATACTTCTAACACAAAGGCCGGCCAACAACCTGCAGCGTCTTCTACAAACTTGTCAACAGCAGATACAGTAGAGTGCAGCAATTGCAAACATTTTATACCATTAAGAACAATAGCACTTCATGAGGCCTATTGCAGAAGACATAATGTTATCTGTCAACATGCTGATTGTGGTATTGTCCTTCGGACTGAAGAGGTCAAGAACCATGTGCATTGTCAGAAATGTGGACTAGCTTTTCACAGTGGAGAGATAGTAAAACATACGAAAGTGTTTCATGAGCCGCTACGTTGTGGGTGTGGGGTCATCCTTGAGAAGACAGAAATGGTGCAACACCAGTCCTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGGGACATGGTCCAAGCTGGTTCTTTAGCCGTGGATACACGAGATCGGTTGAGAGGACTTTCAGAACATGAGAGTATTTGTGGATCAAGAACTGCCCCATGTGACTCCTGTGGTCGGTCTGTTATGCTGAAAGAAATGGAAATTCATCAGGTAGCTGTCCATCAGAAGAATTGA 1722 43.26 MDYELRRAREKLEKEQRDRKEAAKKRIEKEKKAKQEAASRREAIEAAQRSRRIHAIESQLKAEQQMEEDIFAGRGISFNRVLEAVPFEGAGDKIKLPASCFNDLSSEGAFEKGPLHFQLSVVQQNESSQSQSVPVESIHRGSTHAGVLEFTAEEGTVGIPPHIWNNLYSKQDPMTPLVEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTYHLRVLELKPSSSVSVLETDIEVDIMGPDSLPEKSSQHVLKPLTFGKSESGVINEGEYTYYKFSIDNDIWSIIKSGDAEVEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDVGSKCLVLSSKDNSLGAGIYSVGVYGFKGTTKYNLLLTVQDTSNTKAGQQPAASSTNLSTADTVECSNCKHFIPLRTIALHEAYCRRHNVICQHADCGIVLRTEEVKNHVHCQKCGLAFHSGEIVKHTKVFHEPLRCGCGVILEKTEMVQHQSSECALRLVTCRFCGDMVQAGSLAVDTRDRLRGLSEHESICGSRTAPCDSCGRSVMLKEMEIHQVAVHQKN 573
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01985 573 Coils Coil 5 47 - -
Ecan3g01985 573 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 481 533 IPR013083 -
Ecan3g01985 573 MobiDBLite consensus disorder prediction 1 48 - -
Ecan3g01985 573 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 545 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Ecan3g01985 573 Pfam TRAFD1-XAF1, zinc finger 536 565 IPR049439 -
Ecan3g01985 573 Pfam Ubiquitin fusion degradation protein UFD1 90 262 IPR004854 GO:0006511(InterPro)
Ecan3g01985 573 Gene3D - 187 260 - -
Ecan3g01985 573 Gene3D - 281 395 - -
Ecan3g01985 573 Gene3D - 76 185 IPR042299 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01985 K14016 ubiquitin fusion degradation protein 1