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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01987 ATGAGATCATCATCACAAGAGAATAAAGCATTAGCAAGTCTTAAAGAGATGGAGAAGGTTATAGGGTATAAGTTCAAGAAAAAGGATTTGTTGCAACAAGCGTTTACACATCCAAGTTATCAAGGAGCTGAATCATATGAAAGACTCGAGTATGTTGGTGATTCCATTCTAAATTTTCTAATCAGTAAACAACAGTTCTTTATGTACCCGAATCTCCCACCAGGGTCATTGACTGCACTTCGAGCTGCCAACGTTGACACTGAGAAGCTAGCGCGTGTAGCAGTTAAATATAACTTTCATAAGTACCTACGCCACGAGAATCCAATGCTTAGCAAGCAGATTCGAGTGTTTACGAGTGCTCTTGAAAAGTATCCCTTTCATTCATTTGGGTTAATTGATGCTCCAAAGACTTTAGCCGATATTGTTGAATCCACAATAGGAGCTATCTACGTTGACAGCAATTCTTCAATTGATACCACATGGGAGGTAGCTAAAGTTCTACTCGAGCCCATGATCACTCCTGAAATGCTCCAACACAATCCAGTAAGGAAGCTCAATGAACTCTGTCACAAAAAGAAACTGAAGATACGATTCAGAGACAAATGGTCAAAACAAGGAGTGTATGAAGTTTTTATTGATAATCAACTTAAAGGAAGAGGCGAGTACAAAGCCAAGAAGGAAATTGCGTTGAATAGAGCAGCTGAGGATGCATGTAACAACATTTTGAACAGCGTGAATGCTAAAAGCAATGTAACTGAAAGTGAAGAATAG 771 39.04 MRSSSQENKALASLKEMEKVIGYKFKKKDLLQQAFTHPSYQGAESYERLEYVGDSILNFLISKQQFFMYPNLPPGSLTALRAANVDTEKLARVAVKYNFHKYLRHENPMLSKQIRVFTSALEKYPFHSFGLIDAPKTLADIVESTIGAIYVDSNSSIDTTWEVAKVLLEPMITPEMLQHNPVRKLNELCHKKKLKIRFRDKWSKQGVYEVFIDNQLKGRGEYKAKKEIALNRAAEDACNNILNSVNAKSNVTESEE 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01987 256 SUPERFAMILY RNase III domain-like 13 174 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 SUPERFAMILY dsRNA-binding domain-like 136 241 - -
Ecan3g01987 256 Pfam Ribonuclease III domain 47 153 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 CDD RIBOc 29 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 ProSiteProfiles Ribonuclease III family domain profile. 14 154 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 SMART riboneu5 29 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 Pfam Double-stranded RNA binding motif 181 240 IPR014720 -
Ecan3g01987 256 FunFam Endoribonuclease dicer-like 1 8 175 - -
Ecan3g01987 256 ProSitePatterns Ribonuclease III family signature. 47 55 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 Gene3D - 184 247 - -
Ecan3g01987 256 Gene3D Ribonuclease III domain 8 183 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ecan3g01987 256 PANTHER DICER-RELATED 8 244 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01987 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30913625 Ecan3g01989 Ecan-Chr3:30913625 dispersed
Ecan Ecan-Chr3:30909100 Ecan3g01987 Ecan-Chr3:30913625 tandem
Ecan Ecan-Chr3:30913625 Ecan3g01988 Ecan-Chr3:30913625 tandem