AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01990 ATGATTAAACACATACTAAACAAGCTTCCAAAAAAATCATCTTCTAAATCATCACATAATGATGAAGATATAGATTTTGGTGCTATAACTTCATCATCTAGTAAAGTTTCAAGCTCCAGCTCGATTTCGAGTAAATCGAATGATGAAGCGCGTAATTCGAATGTTAAGCCTGGTCAAGGGAAAAAGTCAGGTCCTGTTGTGACCCAAGTGGTGGAAGTAGTAAATCATGATTCTTATATAGCATTGCCTAGTTTTCGGGAGGTATCAAGTTCAGAAAAACAGAATTTGTTTATCAAGAAGTTGAATATGTGTTGTGTAGTGTTTGATTTCAATGACGCTGTTAAGGATTCGAAAAAAAAGGATGTGAAGAAACAGACATTGCTTGAGGTTGTTGATTATGTTTCCTCAGTTAATTCAAAGTTTAATGAAGTTACAATTCAGGAGATCACGAAAATGGTGGCTGCTAATCTATTTAGGTCCTTGCCTAATTTGAATCACGAAAACAAAGTCTTGGATTTGTATGATCAAGAAGATGATGAGTTTTATATGGATCCTTCATGGCCACATCTGCAAGTTGTGTATGAGTTCCTTCTTAGGTTTGTGGCTTCATCGGAGACAGATGCAAAGCTTGCCAAAAGGTATCTTGATCATTCATTCGTGTTGAAGTTGCTTGATCTTTTTGATTCAGAAGATCAAAGAGAAAGGGAGTATCTTAAGACAATCATGCACCGGATATATGGAAAGTTCATGGTGCATCGCCCGTTTATCAGGAAAGCCATCAACAATATCTTCTATCTTTTCATATTTGAAACAGGTAAGCACAATGGGATAGCCGAATTGCTTGAGCTTTTGGGTAGTATAATTAACGGGTTTGCTTTGCCATTGAAGGAAGAACATAAGCTTTTTCTTGCCCATGTTTTGATCCCCCTTCACAAGCCCAGAAGTTTATCGGTTTATCAGCCGCAACTATCATACTGTGTTAGTCAGTTTATTGAAAAAGACTCCAAGTTGGCCGATATGGTGATTCGTGGTTTATTGAAGTATTGGCCTGTAACTAATAGTTCAAAAGAGGTCTTGTATCTAAGTGAATTGGAGGAAATACTTGAAGCTACACGGGCTCCGGAATTTGAGAAGTGTATGGTCCCTTTGTTTCGTCAGATTGGTCATTGCCTAAATAGCTCACATTTTCAGGTTGCAGAACGTGCACTGTTCCTATGGAATAACGAGCATATAAGGAATCTAATAACTCAAAATCGCAAGGTGATTCTGCCCATTATATTCGCCCCCTTGGAGAAAAATACTCAAGGTCATTGGAACCAAGCCGTTCAAAGCCTAACTGTAAATGTCAAAAAACTACTATCAGATGCCGATCAATTATTATTCGCAGATTGCCTGGTCAAGTACCAAGAATATGAAACCAAGGAGAAGGAAAGACTAGCAAAGCGACAGTTGACATGGAGCCGTCTGGATGCCATTGCAGCTTCCAGGAACGAGCCTATGGTCATCTCGAGGTTTGCCTCTTCTGTTACTATCACCACTGTGAATTAA 1548 38.76 MIKHILNKLPKKSSSKSSHNDEDIDFGAITSSSSKVSSSSSISSKSNDEARNSNVKPGQGKKSGPVVTQVVEVVNHDSYIALPSFREVSSSEKQNLFIKKLNMCCVVFDFNDAVKDSKKKDVKKQTLLEVVDYVSSVNSKFNEVTIQEITKMVAANLFRSLPNLNHENKVLDLYDQEDDEFYMDPSWPHLQVVYEFLLRFVASSETDAKLAKRYLDHSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYLFIFETGKHNGIAELLELLGSIINGFALPLKEEHKLFLAHVLIPLHKPRSLSVYQPQLSYCVSQFIEKDSKLADMVIRGLLKYWPVTNSSKEVLYLSELEEILEATRAPEFEKCMVPLFRQIGHCLNSSHFQVAERALFLWNNEHIRNLITQNRKVILPIIFAPLEKNTQGHWNQAVQSLTVNVKKLLSDADQLLFADCLVKYQEYETKEKERLAKRQLTWSRLDAIAASRNEPMVISRFASSVTITTVN 515
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01990 515 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 82 493 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ecan3g01990 515 SUPERFAMILY ARM repeat 94 476 IPR016024 -
Ecan3g01990 515 Gene3D - 89 491 IPR011989 -
Ecan3g01990 515 PIRSF PP2A-B56 3 514 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ecan3g01990 515 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 497 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Ecan3g01990 515 MobiDBLite consensus disorder prediction 1 66 - -
Ecan3g01990 515 MobiDBLite consensus disorder prediction 24 59 - -
Ecan3g01990 515 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 89 492 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01990 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Event-related genes

Select Gene_1 Gene_2 Event_name
84794 Ecan3g01990 Ecan5g01519
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:24169794 Ecan3g01990 Ecan-Chr3:30930602 dispersed
Ecan Ecan-Chr3:30930602 Ecan6g02367 Ecan-Chr6:34126626 dispersed
Ecan Ecan-Chr8:34185230 Ecan3g01990 Ecan-Chr3:30930602 transposed
Ecan Ecan-Chr3:30930602 Ecan5g01519 Ecan-Chr5:28948480 wgd