AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g01994 ATGGAAGAACACACGACGACCACCGCACACCCGAACCAAAACCTAATCACACAATTCTCCGAAATCACCTCCGCTTCCCTTCAAGAAGCCACTTTCTTCCTCGAATCACACAATTTCGATCTCGATTCCGCCGTTTCCACCTTCTTCGAAACTTCCTCCGCCGCTGCCGCAGCCGATCAACGAAACCCTAACCTTAACCCTACCATTCCAACCGATGATCTCGCTTCTCCGGATTCTTCACCGTCTCGTTCCCGATCAGCTTCTCCACCTCCGTCTTTTGGTTTACAACAAGTAGCTGCTGCTGGTGGTGGAAATCCGTATAATCTTCGGTCTCGGAATGCCGGTGGTTCGGATAAGAAGAAGGCGTCTAGTAGTCGGATTCGAACGTTTTCCGATCTGAATCAAACCGGCGCTGGTAATTCCGGTGATGATTCTGATGAGCCTCAGGAGTACTATACTGGTGGTCATAAGAGTGGAATGCTTGTTCAGGATCCTAAAAAGGTGAATGATGTGGATGCACTCTTTAACCAAGCTAGACAAGCAGGAGCTGAACAAGGACCTCCTGATCAAGTCCAACCATCTTCAAGCTCCAGATTCTTTGCTGGAAGAGGAAGAATTCTGTCTGGAGTGACAACATCATCTGATGCACCTCAGCAAGTTGAAACTGAACCCCACACACACACCATCACTTTCTGGACCAATGGTTTCACTGTGAATGATGGTCCTTTGAGGAGGCTGGATGATCCTCAAAATGCATCTTTCTTAGAGAGCATAAGAAAATCTGAGTGTCCCGATGAACTTAGGCCTCCAAAAGGAAGAGCACCTGTCCATGTTAACCTTGTGAAGAAGTTGGAGGAGTACCCTGTCCAGAAACACCGCCCTGCTGCCTTTGCGGGGGTGGGTAGAACCTTAGGCACTGCCAGTTCTTCAGATGATACAGCTGCCACCAGTGCCTCTGTTCCTTTAGCCGCTGCCCCAGCCCCATTTGTGGGACTAGCTGTGGATAGCACATTACCCTCTACCTCCATACAACTGAGATTGGCTGATGGGACCCGTATGGTTTCACGCTTCAATTTGCACCACACTATAAACCATATCCGTTCTTTCATTGATGCATCAAGACCCGGAGGGTCCAGGACTTATCAGTTACTGACCATGGGATTTCCTCCAAAGCAGCTCAACAATTTGAGTCAGACCATTGAAGATGCTGGGTTAGCTAATTCCGTTGTCATCCAGAAACTCTAA 1245 48.59 MEEHTTTTAHPNQNLITQFSEITSASLQEATFFLESHNFDLDSAVSTFFETSSAAAAADQRNPNLNPTIPTDDLASPDSSPSRSRSASPPPSFGLQQVAAAGGGNPYNLRSRNAGGSDKKKASSSRIRTFSDLNQTGAGNSGDDSDEPQEYYTGGHKSGMLVQDPKKVNDVDALFNQARQAGAEQGPPDQVQPSSSSRFFAGRGRILSGVTTSSDAPQQVETEPHTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPDELRPPKGRAPVHVNLVKKLEEYPVQKHRPAAFAGVGRTLGTASSSDDTAATSASVPLAAAPAPFVGLAVDSTLPSTSIQLRLADGTRMVSRFNLHHTINHIRSFIDASRPGGSRTYQLLTMGFPPKQLNNLSQTIEDAGLANSVVIQKL 414
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g01994 414 Gene3D - 11 52 - -
Ecan3g01994 414 Gene3D SEP domain 224 286 IPR036241 -
Ecan3g01994 414 Pfam UBX domain 339 413 IPR001012 GO:0005515(InterPro)
Ecan3g01994 414 PANTHER UBX DOMAIN CONTAINING PROTEIN 11 413 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Ecan3g01994 414 SUPERFAMILY UBA-like 11 51 IPR009060 GO:0005515(InterPro)
Ecan3g01994 414 MobiDBLite consensus disorder prediction 127 147 - -
Ecan3g01994 414 FunFam Plant UBX domain-containing protein 4 224 286 - -
Ecan3g01994 414 ProSiteProfiles SEP domain profile. 224 289 IPR012989 -
Ecan3g01994 414 SMART ubx-3 335 414 IPR001012 GO:0005515(InterPro)
Ecan3g01994 414 Pfam SEP domain 229 302 IPR012989 -
Ecan3g01994 414 Pfam UBA-like domain 13 52 - -
Ecan3g01994 414 SUPERFAMILY Ubiquitin-like 297 412 IPR029071 -
Ecan3g01994 414 FunFam Plant UBX domain-containing protein 4 289 414 - -
Ecan3g01994 414 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 222 308 IPR036241 -
Ecan3g01994 414 CDD UBX-UBXN2 342 413 - -
Ecan3g01994 414 Gene3D - 289 414 - -
Ecan3g01994 414 ProSiteProfiles UBX domain profile. 336 413 IPR001012 GO:0005515(InterPro)
Ecan3g01994 414 MobiDBLite consensus disorder prediction 55 162 - -
Ecan3g01994 414 SMART faf-3 221 314 IPR012989 -
Ecan3g01994 414 MobiDBLite consensus disorder prediction 55 93 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g01994 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:30948412 Ecan3g04107 Ecan-Chr3:47515917 dispersed