AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02007 ATGGACGTACTCTTCAAATCAATCGACGTTCGCGACCTTTTATCCTCCCACGATCTCGACGAATCATCACCTCTTTCCGCTCCAGACCTTCGTCTCTTAATCGACCGTTTAAATCTCCACTCTCTTCACATCAAATCAAAAGTCCATTCCTACATTCAATCTCACCACCACCACTTCTTATCCTTATTCTCTCTCTGTTCCGACCACCTTAAAAACTCCGACCACCTGTCCCGACAACTCTCCGACCTTGTCAATCTCTTGTCTTCCTCAAATGGGTCGAAATCAATTGATGTTGAGATTAAAGAAACAGTAGATGAGTTAAGGATTAAAAATGAGGAATTGGGGGTTAAAAATGAAATCTTGAAGTTGGTTTCTTGGATTGTGAAAGTGAATGATGAGTTGGGGAATGTGGATAAAGATTTGGGTGTTGGAAAGTTTGTTGATGCTGCGGTTAAAGTTATCGACTTGAAGGCGGCATTACGAGTGAGTGATAATGATGATGATGATGATCATGAGACTGAACCGGTTGTTTTCGGTTTGTTGAGGAATAAATGGAGAGACTGCTTTCAAAAGATACAAGAGGTGTTAGTGAAGTTTATTGAGAACGCAGTGAGATTCGATCACGAGACTAATGTGGTTCATGTGAAGAATACTCTCAGTGTTAACGATATTCAAGGGGTTGAACTTTCTACTGTTTTGAAAGCAATGGATGTGGTTGGCATTCTTGATTATGGGCTTGCTAAAGTAGCAGACTTGATGACTAGATATGTTATATCCCCGGCATTGCGATCGGGTTATCATAGTTTTTCTGTAGAAGAACAAAAAGTAGATTCAGGGGAAGTAGCTGAGGTAGTTTTGAGGATAACTGCACCTTCTGCCCCTCAGATAGGGAACATGGATGCTGAAATTATATATTCTGGAGTTAATGTGGTCATTCAGTTTATATTCAACTACATTTGCTTTCAAAATTCTTCCTGGATGCATCTATTTGGAAGATTGACGTGGCCCCAGATGTCGGAAATGATTATTTCTAACTTCCTTTCAAAGATTGTTCCCAATGACGCTTCTAAACTCGCTGACTTCCAAATCATTAGACAACTAACGTCTGAGTTTGAGAAATCTCTTAAAGAAGTTGCATTCATCTCCTCTGGCAAAGATGAGAGGTTGACCAATTTTGCCGACAATGTTGAAGTTCACTTTGCAACGAGGAAGAAGGTTGAGATTTTAGCAACAGTCAGGGAGCTGCTCCAAAAGTCAGATTTTAAACTTCCAAAGGCCTATTCTAGGGAAAATGCTGGTTATAAGAATGGCGGGAACGTAGACTTGCTTTTTTCGTCTGAGAGGTGTGTCATATCCGAAGCAGCTTCTCGGCTAATGGAAGTTGTGCATCAAACACTCAAGGATATATGCTTGTCACCTGCAACTGTGGCTTTAGAATTCTATCATGCTGCTAGGGACGCTCTACTAATGTATGAAGCTGTTATTCCTGTCAAGCTAGAACGACAGCTGGATGGTATCAACCAGGTTGCTGTTCTAATTCATAATGATTGCCTATTCTTGTCACAGGAGATTCTTGGCCTTCCATTCCAGTATCAATCGGACTTTCCAACTTCCATGAAGGGAGCTGCGTTTATTGATTTGGGTATAAGATACAAGTTGATGGCAGAAGAGATATTACTAAGACAAGTGCAGCTTGTGAAACATAATTTAATGGAGGCCATTGATGGTGCTGATGGATTTCAGAATACCCACCAACCAAAAAGACGTGAATCTGCAGAATTTAGTATTGATCAGGTAGCTTTTATCCTTGAGAAAGTGCGCATAATATGGGAGCCGCTGTTGCTACCCTTGACATACAAAGGAAGCATGTGCTCAGTTTTGGAGGCTGTATGCTCTAGAATGACGAAAGACATACTTCTTTTAGATGACATTGCAGCAGATGAAACACTACAGATCCAAAGGTTAATTCATATGTTGCTGAACAACCTTTCGTCTTTAATGGAGTCTTTGGTTGCCATCTATCAAACAACGAAACCACAGGGCGCATCATCAGCCTCTATTGATGATCTCGTACCATCACTCCCTCGACTTAGGATATTGGCAGATATGATGGACATGCCTCTGAAGTCCATCACTGCTTCTTGGGAAAATGGGGAACTGGCCAACTTCGGTTATACTTCATCTGAGGTGAGAGACTTGATCAGTGCAATATTTACAGATTCACCCTTACGGAAAGAATGCTTGTGGAGAATCGAAAATATCAAGTTTTAA 2271 41.0 MDVLFKSIDVRDLLSSHDLDESSPLSAPDLRLLIDRLNLHSLHIKSKVHSYIQSHHHHFLSLFSLCSDHLKNSDHLSRQLSDLVNLLSSSNGSKSIDVEIKETVDELRIKNEELGVKNEILKLVSWIVKVNDELGNVDKDLGVGKFVDAAVKVIDLKAALRVSDNDDDDDHETEPVVFGLLRNKWRDCFQKIQEVLVKFIENAVRFDHETNVVHVKNTLSVNDIQGVELSTVLKAMDVVGILDYGLAKVADLMTRYVISPALRSGYHSFSVEEQKVDSGEVAEVVLRITAPSAPQIGNMDAEIIYSGVNVVIQFIFNYICFQNSSWMHLFGRLTWPQMSEMIISNFLSKIVPNDASKLADFQIIRQLTSEFEKSLKEVAFISSGKDERLTNFADNVEVHFATRKKVEILATVRELLQKSDFKLPKAYSRENAGYKNGGNVDLLFSSERCVISEAASRLMEVVHQTLKDICLSPATVALEFYHAARDALLMYEAVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLPFQYQSDFPTSMKGAAFIDLGIRYKLMAEEILLRQVQLVKHNLMEAIDGADGFQNTHQPKRRESAEFSIDQVAFILEKVRIIWEPLLLPLTYKGSMCSVLEAVCSRMTKDILLLDDIAADETLQIQRLIHMLLNNLSSLMESLVAIYQTTKPQGASSASIDDLVPSLPRLRILADMMDMPLKSITASWENGELANFGYTSSEVRDLISAIFTDSPLRKECLWRIENIKF 756
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02007 756 Pfam Centromere-kinetochore Zw10 N-terminal 39 133 IPR009361 GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro)
Ecan3g02007 756 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 4 753 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Ecan3g02007 756 Pfam Centromere-kinetochore protein zw10, C-terminal 444 572 IPR048343 -
Ecan3g02007 756 Gene3D - 549 755 IPR046362 -
Ecan3g02007 756 Pfam Centromere-kinetochore protein zw10, middle domain 181 416 IPR048344 -
Ecan3g02007 756 Pfam ZW10 C-terminal helical domain 595 751 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02007 K11578 protein transport protein DSL1/ZW10
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31092199 Ecan3g02007 Ecan-Chr3:31092199 tandem