AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02010 ATGGAGAAAGCAAGAAATACTAGCGAAATATCGGTTACTTGGAGGGGGAAGAAGTATGTTGTGCCTATGGATTTAGGTGCTACTTTAAAAGAATTGGGGCATGAGTTGCAGAAACTGACTGCAGTGAAAGCAGATACTTTGAAGCTCATTGTTCGAGCCCAGAAATCTTCAAAATTGTTATCTCCTTTCTCTGACGAGCACTCCCATGTTACCTTGAAGGAAGCTTCCATCATCGAGGGGAAGGCTATACAAATGATGGGAGTGCCAAAAGAAGAGATTGATCAAGTTCTTCAAGATGCAAAGACGGATATGAGAATAGCTGGGTTTGATGAAGAGGAGAAGCGAATTAGACAAAGGGTGTCGAATGGGGTTGCTACACCGTTGCAGCTTCCACATGGAAATTATGTTTTTGGTGCTTTTAAAACACTTGATCTTCCAGGGATCGAGTTATATCCTCCGGCTTCAGAGGCACTGAGACTAATGCACACGCTTGCTGCAGATCCAGGAATAGTTGCTATCATGAATAAGCATAAATGGCATGTGGGAATTATGACAGAGATGGCTCCAGAGGGTTATGTTGGCGTGAGTCCTGTGTGCATTCTTGGTTTTAACAAGAATCATGGCGAGGAGATATCTTTGCGTCTTCGAACTGATGATCTCAAGGGTTTCAGAAAATATCAGAGCATTAAGAAGACTCTCTTGCATGAACTTGCCCATAGGGTTTACTCTGAACATGATGCAAAATTCTTTGCTCTAGATAGTCAGCTTAACAAGGAGGCCAGTGCTCTAGACTGGACTAGATCCACGGGTCACACGTTAAGTGGATCTCAGAAGACACAACAACATGGATATGAGTTTCATGCTACTGATAGTAGTATTAGTGGTAGTTTGTCTCATAAACTTGGAGGAAGCCAGTCATCCAGTTCATTGGCAAATGCTCGAGCATCTTCAGTTGCTGCTGCTTACGAACGTTTAGTAATTGCATCCAACAATCTATCAAGAACACCCGAAACACATAAAGAACCCGATCCTGATGATTCTATGGATGTAACTATGTATAAGCCAGCTGTCCTGGACCTGGGCGAAAAACAAACTTGTGAACCTGACCCAGATGACCTTGAAGTAATTAATAGAAATGAGCCCAACTCGGACCTGAACATCAATAAGCCAGATGCTATGCACATCAGTGAGAAACAAACCTATGAACCTGGCCCTGATGACCATGAAGTAAGTAATCCGGATGTGGCCATGAATAAGTCAGATGCTATGGACATTAGCGAGAAGCAAACTTATGAACCTGATCCTGATGACCATGAAGTGCTTCACAGCAAAAATGAGCCTGATCCGGATGATAGTTTGAACAGTGAAGCTATGGAATCTGAACCATGTGGCGATTTGACCCAAAACAATGTGACTTCTGATGAATTGGGTACTTTGGTTGGTGTGTCTGAAGATGAACACAAGAGGGAAATCCACGAGCCTGATCCTGATGATGGTATCTTGCATGATGATGAACTACAGAGAATTCAAGATCCTGTCATGATTGCGTGTAATCGTTTGAATAAATCCATTAAGATGCTGCAATCAGAAGTTAGTCCTTCAGAGGCTGCAGTGGTTTTCCAGACACTCGTTAAGATTGTCAGGAATGTTATTGAACACCCCGATGAAACAAAATTCAAGAAACTTCGCAAGGCTAACCCTGTAATCCATAAGAACATAGCAAGTTACAATGCTGCAATGGAGATACTGTTTTTGATTGGTTTTTGTGAAGATGTTGTTCAAGACGAGATTGGTAGAGCAGAGGCTTATTTGGTGTTGAAGAGGAATGATCCAGGCTTGTTGTGGCTGGCCAAATCCTCTTTGGAGACATGCATTGCTTTCTAG 1884 42.52 MEKARNTSEISVTWRGKKYVVPMDLGATLKELGHELQKLTAVKADTLKLIVRAQKSSKLLSPFSDEHSHVTLKEASIIEGKAIQMMGVPKEEIDQVLQDAKTDMRIAGFDEEEKRIRQRVSNGVATPLQLPHGNYVFGAFKTLDLPGIELYPPASEALRLMHTLAADPGIVAIMNKHKWHVGIMTEMAPEGYVGVSPVCILGFNKNHGEEISLRLRTDDLKGFRKYQSIKKTLLHELAHRVYSEHDAKFFALDSQLNKEASALDWTRSTGHTLSGSQKTQQHGYEFHATDSSISGSLSHKLGGSQSSSSLANARASSVAAAYERLVIASNNLSRTPETHKEPDPDDSMDVTMYKPAVLDLGEKQTCEPDPDDLEVINRNEPNSDLNINKPDAMHISEKQTYEPGPDDHEVSNPDVAMNKSDAMDISEKQTYEPDPDDHEVLHSKNEPDPDDSLNSEAMESEPCGDLTQNNVTSDELGTLVGVSEDEHKREIHEPDPDDGILHDDELQRIQDPVMIACNRLNKSIKMLQSEVSPSEAAVVFQTLVKIVRNVIEHPDETKFKKLRKANPVIHKNIASYNAAMEILFLIGFCEDVVQDEIGRAEAYLVLKRNDPGLLWLAKSSLETCIAF 627
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02010 627 MobiDBLite consensus disorder prediction 428 473 - -
Ecan3g02010 627 Pfam WLM domain 150 325 IPR013536 -
Ecan3g02010 627 Gene3D - 520 621 - -
Ecan3g02010 627 MobiDBLite consensus disorder prediction 428 451 - -
Ecan3g02010 627 Pfam PUB domain 538 612 IPR018997 -
Ecan3g02010 627 Gene3D - 3 93 - -
Ecan3g02010 627 PANTHER ZINC METALLOPROTEINASE-LIKE PROTEIN 1 461 - -
Ecan3g02010 627 MobiDBLite consensus disorder prediction 364 378 - -
Ecan3g02010 627 SMART PGNneu 538 607 - -
Ecan3g02010 627 MobiDBLite consensus disorder prediction 360 391 - -
Ecan3g02010 627 ProSiteProfiles WLM domain profile. 131 326 IPR013536 -
Ecan3g02010 627 CDD PUB-WLM 524 623 - -
Ecan3g02010 627 SUPERFAMILY Ubiquitin-like 6 90 IPR029071 -
Ecan3g02010 627 SUPERFAMILY PUG domain-like 513 625 IPR036339 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02010 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]