AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02012 ATGTTATTCTTGATGTCTGTCAAAAGCCCATTGATGCCCCCATTACAGCCTCACACAACACAAAAACAACATCAATTCATAACATTGAAAAAACCAACAAAAACCCATGTTTATAATAATAATACTTCAATTAAGGCCCAGAAAACATCTGGGTTTTTGTCAGCAATTGGGAATGCAATTGAGGAACAAGAGTATAGAAAAGCAAGGGCTGAGGTTATTCGAAAAGGGACTGGGTTAGAAGGTTATAATATTGAGGGTGTTTCAATTGGTGGGCATGAGACTTGTGTTATTATTCCTGAGTTTAAGTGTGCTTTCGATATTGGAAGGTGTCCGCCCCGGGCCGTTGGGATGAATTTCTTGTTTATTACTCATGCTCACCTTGATCATATTGGCGGGCTACCGATGTATATTGCAACTCGTGGCCTATACAGCATGAGTCCTCCGACTGTATTTGTACCTCCTTCCATTAAAGAGGATGTTGAAAACTTGATTGAACTTCACAGGAAGATGGGTCAGGTGGAGTTAAATGTTGACTTGGTTGCACTGGATGTAGGAGAAACATACGAGCTAAGAAACGACCTTGTTGTCCGCCCATTTAAAACACACCATGTGATACCGAGTCAGGGTTATGTCATTTACTCGGTTCGCAAGAAGCTGAAAAAGCAATATGCTCATTTGAAAGGACGAGAAATTGAGAAAAAGAAGAAATCTGGGATTGAGATTACAGATATCATATTGTCCCCGGAAGTGGCATTCACTGGGGATACGAATTCTGATTTTCTACTTGATCCACGAAGTTCTGATGCCTTGAGGGCCAAAGTTCTTATAACTGAGGCTACTTTTTTGGACGACCAATGCAACATTTTGCATGCACGAGACCATGGTCACATGCATATTGACGAGATTATCGAGCATGCTGAATGGATCCGAAACAAAGCCATTCTCCTGACCCATTTTTCCTCACGCTACCATATTGAGGAAATTCGTCAAGCTGTGACAAAGTTGCAGTCAAAGGTTTCAGGCAAGGTGGTTCCGCTTACAGAAGGTTTTAGATCATTGTACTCGTCATAA 1071 41.36 MLFLMSVKSPLMPPLQPHTTQKQHQFITLKKPTKTHVYNNNTSIKAQKTSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYNIEGVSIGGHETCVIIPEFKCAFDIGRCPPRAVGMNFLFITHAHLDHIGGLPMYIATRGLYSMSPPTVFVPPSIKEDVENLIELHRKMGQVELNVDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYAHLKGREIEKKKKSGIEITDIILSPEVAFTGDTNSDFLLDPRSSDALRAKVLITEATFLDDQCNILHARDHGHMHIDEIIEHAEWIRNKAILLTHFSSRYHIEEIRQAVTKLQSKVSGKVVPLTEGFRSLYSS 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02012 356 Pfam Beta-lactamase superfamily domain 116 319 IPR001279 -
Ecan3g02012 356 Gene3D - 82 350 IPR036866 -
Ecan3g02012 356 SUPERFAMILY Metallo-hydrolase-oxidoreductase 117 332 IPR036866 -
Ecan3g02012 356 PANTHER TRNASE Z TRZ1 21 350 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02012 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:41498264 Ecan3g02012 Ecan-Chr3:31131379 dispersed
Ecan Ecan-Chr2:41498264 Ecan3g02012 Ecan-Chr3:31131379 dispersed