AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02036 ATGGGTTGTAAAATCTTAAATTTGCTGCTTTTGATATTCATATCAAATATTGCAGTTTCTTATGCTGAAAGATGTAGAACATATACTTTTTCAAGTAACACAACATACGCATCATGTGTTTCTTTACCTGTTTTAAACTCCCACCTTCACTGGAACTATTACAACACTAATGGAACCGTGGACGTGGCTTTTCGCCACACGGGCTCCACCATGTATCAATGGGTTGCTTGGGCACTTAACATTCGTGGGTCGGGCATGATTAATGCTCAAGCCCTTGTTGCTTTACCAACCCCAAATGGGTCAATTGAAGCTTATACTTCATCCGTAGAAGGGAATGCAACAACTTTGCAACGAAGTGCGTTGAGCTTTGATGTTCCGGCGATCAGGGCTGAGAGAGTTGGTGGTGATGTGATTATTTATGCTACTTTGGTTTTGCCTAATGGGTCAACTAACTTTAACCAAGTTTGGCAAGTGGGTCCGGTTACTAATGGTGTCCCCGCTACTCATGCTTTGGACACGGCTAGCCGGAGTTCTATTGGAATGGTTGACTTTTCAACCAGCCAGACTGGTGCTGGTGGTAGCGTTGACGGCTCACGACAACGCCTGAAAAATACTCACGGAGTATTGTGTGCGATTAGTTGGGGAATATTAATGCCAATCGGAGTTGTAACTGCTAGATATATGATGAAAAAGAAAAAAAGACCTTGGTTTTTTGCAGATGATAAAGTAGAAAAAAAGTTTGGGTTTTACTTCCATGTTACAATACAAACAATCGCCTATGTTCTTGGAGTTGCTGGATGGGCCACTGGCCTCAAGCTTGGTGGTGCCTCGGCTGGATCCACACACAAAGTTCACAGAAATATTGGAATCACCATGTTTGTGTTTGGAACACTTCAGGTTCTTGCTCTGAAAATGAGGCCTAAAGAAACGAGCGAATTCAGAACTTGTTGGAAATTCTGTCACCGGCTTTTTGGATGTTTGGTAATCATATTGAGCTTCAACGTCTTCATAGGACTTGATATCTTGGACCCTATTAAGAAGTGGAAGTCGGCATACATCGGCACAGTTAGCACGATGGCGGCTATTACGAGTATATTAGAAATAGCGACATGGTTAATGTAG 1122 42.51 MGCKILNLLLLIFISNIAVSYAERCRTYTFSSNTTYASCVSLPVLNSHLHWNYYNTNGTVDVAFRHTGSTMYQWVAWALNIRGSGMINAQALVALPTPNGSIEAYTSSVEGNATTLQRSALSFDVPAIRAERVGGDVIIYATLVLPNGSTNFNQVWQVGPVTNGVPATHALDTASRSSIGMVDFSTSQTGAGGSVDGSRQRLKNTHGVLCAISWGILMPIGVVTARYMMKKKKRPWFFADDKVEKKFGFYFHVTIQTIAYVLGVAGWATGLKLGGASAGSTHKVHRNIGITMFVFGTLQVLALKMRPKETSEFRTCWKFCHRLFGCLVIILSFNVFIGLDILDPIKKWKSAYIGTVSTMAAITSILEIATWLM 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02036 373 ProSiteProfiles DOMON domain profile. 45 159 IPR005018 -
Ecan3g02036 373 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 8 372 - -
Ecan3g02036 373 SMART 561-7 205 339 IPR006593 -
Ecan3g02036 373 ProSiteProfiles Cytochrome b561 domain profile. 170 373 IPR006593 -
Ecan3g02036 373 Pfam Protein of unknown function (DUF568) 86 184 IPR045265 -
Ecan3g02036 373 Gene3D - 160 373 - -
Ecan3g02036 373 CDD DOMON-CIL1-like 36 186 IPR045265 -
Ecan3g02036 373 PIRSF UCP037471 1 373 IPR017214 -
Ecan3g02036 373 CDD Cyt-b561-FRRS1-like 168 368 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02036 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84802 Ecan3g02036 Ecan4g02642
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31304773 Ecan4g02642 Ecan-Chr4:36142020 dispersed
Ecan Ecan-Chr3:31304773 Ecan3g02037 Ecan-Chr3:31317642 tandem
Ecan Ecan-Chr3:31304773 Ecan4g02639 Ecan-Chr4:36132097 wgd
Ecan Ecan-Chr3:31304773 Ecan5g01564 Ecan-Chr5:29389773 wgd