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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02044 ATGTTTCATCATCAAACACAACTTCCACAAAACATGTCCCTAATACCACCACCACCACCACCACCTGATCACCGTGATCTCACCGCCACTTCTGGTCGCTCGTGTGGTGAGATTCATGTGATTGTGGGTCCTATGTTTGCTGGTAAAACAACCGCCCTTCTTCGCAGGATCAAATCTGAAGCCACTTTTGGCAGGAATATAGCAATGATAAAATCAAGCAAAGATAATAGATATGCAATAGATTCGGTTGTGACACATGATGGAACAAAGTATCCATGCTGGGCACTTCCTGATCTCTTGTCTTTCAGACAAAATCTTGGGGAGGAAGCTTATGATAAGTTGGATGTTATCGGAATTGATGAGGCACAGTTTTTCGATGATCTTTATGACTTTTGTAGTAAAGCTGCTGACCATGATGGGAAAACTGTTATAGTTGCTGGTCTTGATGGCGATTACTTAAGAAGGAACTTTGGTCCAGTGCTTGATATAGTACCTATTGCTGACACAATAACTAAGTTAACTGCCCGATGTGAACTATGTGGTAAACGGGCCCATTTTACCCTAAGGAAGACCAGTGACACAAAAACGGAACTTATTGGTGGAGCAGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAACGGACATATGGTGATCAAAACCAGTGCGTAA 675 41.93 MFHHQTQLPQNMSLIPPPPPPPDHRDLTATSGRSCGEIHVIVGPMFAGKTTALLRRIKSEATFGRNIAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFRQNLGEEAYDKLDVIGIDEAQFFDDLYDFCSKAADHDGKTVIVAGLDGDYLRRNFGPVLDIVPIADTITKLTARCELCGKRAHFTLRKTSDTKTELIGGADMYMPVCRQHYVNGHMVIKTSA 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02044 224 PIRSF Tdk 33 223 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Ecan3g02044 224 Gene3D - 174 215 - -
Ecan3g02044 224 FunFam Thymidine kinase 174 216 - -
Ecan3g02044 224 Pfam Thymidine kinase 36 213 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Ecan3g02044 224 PANTHER THYMIDINE KINASE 30 222 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Ecan3g02044 224 FunFam Thymidine kinase 32 173 - -
Ecan3g02044 224 ProSitePatterns Thymidine kinase cellular-type signature. 200 213 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Ecan3g02044 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 216 - -
Ecan3g02044 224 MobiDBLite consensus disorder prediction 1 30 - -
Ecan3g02044 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 174 IPR027417 -
Ecan3g02044 224 Gene3D - 30 173 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02044 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31344648 Ecan9g01203 Ecan-Chr9:11302911 dispersed