AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02052 ATGAATTCATCACTTCTAAAAACATCACCTTTCATCCATTACCCTCTTTTCCCATCTTCAAGAATCTCAAAACATAACAAATTTCCCCCATCTTTTTATTATCAAAATAGGACTGCTCAGTGGGGGACCTCGGTTATCCAAATTTCAAATTCCAAGATTTTCAACACAAGTGTTTATCCAAAGAAACCCATTGATATTGAAGCTCAAAATGAAGAACCCTCCAAGGATTTGTTAAAAAGATTTTATCTTGATAAGTTTAAGGGTGTAATTAGATGTGGATTAATTATGGGGTTGTTCGTTTTGGGGCTAATTAGATGTCAAAATGTTTTGGCAATGGAAAGTGGTAGTGTTTTTGCGCAAAAGATGAAGGCTTTTTGGAATGGGGGAAAGTTTTCGCAGGTTCTTCAGGTTTTTAGAGAGCAAGGTTTAATATTGGCTGGACTTTTGGGATTGTCTGCTTTCTTTTCCATGGCTGAGACTTCAATTACCACTCTTTCACCTTGGAAGATAAGAGAGCTGGCTGAAAAAGAAGGAGAAAATGGTGTGTTCAAGCTGCTTCGTACAGATATCACTCGTTTTCTCACTACCATTCTCATTGGCACAACCGTTGTCAACATTGGAGCCACTGCACTTTTCACTGAGGCAGCAACAACGGTTTTTGGCGAAGCTGGTGTTGGTGCAGCAACGGGTGTTATGACGGTGGTTGTTTTACTTCTGACTGAAATCACTCCCAAAAGTATAGCTGTTCATAATGCTACTGCGGTTGCTAGGGCTGTGGTCCGTCCAGTTGCATGGCTATCTTTGGTTCTATATCCGGTGGGAAGAGTTGTAACTTTTCTATCAATGGGAATGCTTAAAATTCTTGGCTTGAAAGGAAAAAGTGAACCATCTGTGACTGAAGATGAACTCAAGTTGATGTTGAGGGTTGCTGAGCTAAGTGGAGCCATTGAGGAAGAAGAGCAGGATATGATTGAGAATGTGTTGGAGATAAAAGACACTCATGTGAAGGAGGTTATGACCCCTCTTGTAGATGTAGTTGCAGTTGATGTCGGTGCAACATTAGTTGATTTTCATCACTTGTGGGTGACACATCAATATTCTAGGGTACCAGTATTTGAGCAGCGAATCGATAACATCGTGGGTATAGCTTATGCAATGGATTTGCTGGAGCTTGTTAGAAAGGGAGACATGCTAGAAAGTGCAGTGGTAGGAGATATTGCTCACAAGCCTGCATATTTTATTCCTGACTCAATGTTAGTCTGGAATCTTTTGAGGGAATTCCGCATCAGGAAGGTCCACATGGCAGTTGTTCTTAATGAATATGGAGGAACTGTGGGAATTGTAACGCTGGAAGATCTAGTAGAGGAAATTGTTGGTGAAATCTTTGATGAGAATGACTCAAAGGAAGAAATCGAGAGAAAAACTGGAAATATAGTGAAGCGAGCTGAGGGAGTCTTTGATGTTGATGCAAATACATCAATATACCAGCTCTGTGAAGATCTAGATATCGTATTGCCAGAGGATCATCAATACGAAACAGTTTCAGGTTTTATTTGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTATTAAAGTATTTTTGAAGAAAGCAAAAGAAGATGATGATGACAATGACGAGAGAAAACAAGAAACCAAGGGCTATGAACAGAAAGATACGTCTCAAACATTCAAGCTCGGGATATTGGCAGGAAATTGTAGAAAAGTTAGTACTGTGAGATTCGAAAGAATAAACAATAATTCAGGAAAAGAAATCAAAGAAGCTGTCCGAATAGTGCCCAGATTTTGGAAAAAGAAATGGAAAAATGATGAAAGCTCAGGCAGTGGCGATGATGAGCCTAAGATCACCTTCTCCTCTGAGCGCATCTTATTGGAAGATAAACAATGA 1911 39.61 MNSSLLKTSPFIHYPLFPSSRISKHNKFPPSFYYQNRTAQWGTSVIQISNSKIFNTSVYPKKPIDIEAQNEEPSKDLLKRFYLDKFKGVIRCGLIMGLFVLGLIRCQNVLAMESGSVFAQKMKAFWNGGKFSQVLQVFREQGLILAGLLGLSAFFSMAETSITTLSPWKIRELAEKEGENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVGAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSLVLYPVGRVVTFLSMGMLKILGLKGKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVDVGATLVDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLELVRKGDMLESAVVGDIAHKPAYFIPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDLVEEIVGEIFDENDSKEEIERKTGNIVKRAEGVFDVDANTSIYQLCEDLDIVLPEDHQYETVSGFICEAFGYIPRTGESIKVFLKKAKEDDDDNDERKQETKGYEQKDTSQTFKLGILAGNCRKVSTVRFERINNNSGKEIKEAVRIVPRFWKKKWKNDESSGSGDDEPKITFSSERILLEDKQ 636
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02052 636 PANTHER HEMOLYSIN-RELATED 118 609 - -
Ecan3g02052 636 Pfam CBS domain 403 458 IPR000644 -
Ecan3g02052 636 Pfam CBS domain 335 392 IPR000644 -
Ecan3g02052 636 CDD CBS-pair-CorC-HlyC-assoc 334 455 IPR044751 -
Ecan3g02052 636 Pfam Cyclin M transmembrane N-terminal domain 144 320 IPR002550 -
Ecan3g02052 636 Pfam Transporter associated domain 480 581 IPR005170 -
Ecan3g02052 636 ProSiteProfiles CNNM transmembrane domain profile. 134 320 IPR002550 -
Ecan3g02052 636 SUPERFAMILY FAD-binding-transporter-associated domain-like 477 537 IPR036318 GO:0050660(InterPro)
Ecan3g02052 636 Gene3D - 474 567 IPR016169 -
Ecan3g02052 636 SMART CorC-HlyC-2 479 586 IPR005170 -
Ecan3g02052 636 Gene3D - 314 469 IPR046342 -
Ecan3g02052 636 ProSiteProfiles CBS domain profile. 339 400 IPR000644 -
Ecan3g02052 636 FunFam Magnesium-cobalt efflux protein CorC 316 466 - -
Ecan3g02052 636 SUPERFAMILY CBS-domain pair 322 461 IPR046342 -
Ecan3g02052 636 ProSiteProfiles CBS domain profile. 407 464 IPR000644 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02052 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:75318 Ecan3g02052 Ecan-Chr3:31428621 dispersed