AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02054 ATGGATTCATCTTTCCAAATTGAGCCCACAAACAAAAAACTAAAGCTATTCCATGATCTTGATGATCATAACGATCAAGATTATGCAATTCATGGTGACAATTTTGTGTTACAAAATTTACCTAGAGATGTGCTTTTGGACATACTCATTAGGCTGCCAATATCATGCTTGATTCAGTTCAAGTTGGTATGTCACTCATGGAACTCATTGTCTATGGACCCTGAACTAGCCCGGGTTCACCATGTCGCGATGGCGAAAAACGACCCCATGTTAATGTTCCATTGTGATTACCCAATTCGAAACCAACTCTCCTTTGTTGAATTGTCATCAAATGATCATGATGAAAATATTGTAAGAAAGATATCTATTCCTTTTTGTAACTCCATGCCAGAGTTTAATGTTGTGGGATCATGTAATGGTTTGTTATGTATGTCGGATTCGCTATATAGGGAACCTGTTTACGTGTTTAACCCGTTTTCAAGGGACTATCTTGAGTTACCGAAATCTAAGCAGTTTGATGAACAAGAGGTGATATTTGGGTTCGGGTTTCATCCAGTTACAAAGGAATACAAGGTTGTTAAGATTGTTTATTATAGAAACTCACATGGGCGGAAAAGGGTCATTAGAAACATTAGGAATTACCCGAAATCTGAAGTTCAAGTACTCACTATCTCCAAACAAATGAATAAGAGTTCATGGAGATGCATTGGGAAAATGCCTTATCAGATTGATAGACAATTGAAAGGAGTTGCATTGGTAAATGGGAGACTTCATTGGTTGAGTAGACTTAGTCGGGTTTCTGGGGTTTTAGACCGAGAAATCATCTCATTTGACTTAAAAAGCGAGAAGTTTGAAGTGGTGAAGAAGGCTAGTAATATGGTAGTAATCAACAGCAACCATCATTTGGCCACGGTTCAAGGGTGTTTAGCAGTTGTTGCTCCCTGTGGATATGGGAAGTTGGAGATTTGGGTTATGAAGCAATACGGCATCAAGGAATCTTGGATGAAGGAGTTTGTGATTCATGGAGCGTACCATGTGAAAGCGCCAAACCATGAGTACCAACACGGGATATGGAGGCAAGCATTAAGCAAGAGGATGGTTCGGGTTCTTTGTGTCTTGAAGAATGGAGAAATCTTGTTAGAGTATAGAGGAGGGAGGTTGGTCAAGTATGATCCTAAATGGAAAGAGTTTAAAAATGTTGTGTTCCCTAAAATGCCCAAATTGTGTCAAACAATTGTTCATGTTGGTACACTAAATTGGGTACATAATTAA 1272 38.84 MDSSFQIEPTNKKLKLFHDLDDHNDQDYAIHGDNFVLQNLPRDVLLDILIRLPISCLIQFKLVCHSWNSLSMDPELARVHHVAMAKNDPMLMFHCDYPIRNQLSFVELSSNDHDENIVRKISIPFCNSMPEFNVVGSCNGLLCMSDSLYREPVYVFNPFSRDYLELPKSKQFDEQEVIFGFGFHPVTKEYKVVKIVYYRNSHGRKRVIRNIRNYPKSEVQVLTISKQMNKSSWRCIGKMPYQIDRQLKGVALVNGRLHWLSRLSRVSGVLDREIISFDLKSEKFEVVKKASNMVVINSNHHLATVQGCLAVVAPCGYGKLEIWVMKQYGIKESWMKEFVIHGAYHVKAPNHEYQHGIWRQALSKRMVRVLCVLKNGEILLEYRGGRLVKYDPKWKEFKNVVFPKMPKLCQTIVHVGTLNWVHN 423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02054 423 SUPERFAMILY F-box domain 33 97 IPR036047 GO:0005515(InterPro)
Ecan3g02054 423 Gene3D - 33 79 - -
Ecan3g02054 423 PANTHER OS02G0783600 PROTEIN 40 340 IPR052361 -
Ecan3g02054 423 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515(InterPro)
Ecan3g02054 423 Pfam Domain of unknown function (DUF295) 104 313 IPR005174 -
Ecan3g02054 423 Pfam F-box domain 37 76 IPR001810 GO:0005515(InterPro)
Ecan3g02054 423 NCBIfam F-box protein interaction domain 136 372 IPR017451 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02054 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84810 Ecan3g02054 Ecan4g02625
84811 Ecan3g02054 Ecan5g01583
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31453816 Ecan5g01584 Ecan-Chr5:29623769 dispersed
Ecan Ecan-Chr1:43596026 Ecan3g02054 Ecan-Chr3:31453816 transposed
Ecan Ecan-Chr4:35384265 Ecan3g02054 Ecan-Chr3:31453816 transposed
Ecan Ecan-Chr3:31453816 Ecan4g02625 Ecan-Chr4:36078356 wgd