AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02058 ATGTCAACGTCCTCGTCTTCTTCGTCACATGACGGTGGAGACGGTGGCAATGGCGGCGGTGGTGGAGGTGAGTTCGATGAGCCACCACATGCTCGTCAGCGTTTCAACTCGGGTGTGTGGCCTGAACCGTTTCTCGAAGCACTTGCTTCACAAATCGCCATTGATTCTGCCCTCACAGATGGTCGCCTTGCTGCTGCTCCTGCTCTTTTTAATATTTTCCAGGTATGTCGAACATGGCGAACGGTATCCCAGTCTGACCTCCTTTGGCAAACCCTGACACGGCGTATATGGCGTCGTAATCACCTCCTCCATCCGACATGGTATGAAGAATACATTTACCGCCATAGAACAACTAGAAACTTCCGTGATAGAAGGTATATCTACAACACCCTCAACTTCCCTCCGAATGATAACAATAATAATAATAACAATAACGAAATTCTCTCCTGCCGCCGCCTTGCACTATCTGATTACCATCTTGCTGCTGGTTTTTCCGATGGGTCTGTTCGCCTATTTCACCTTCCCACGAGGCATCACGTGTCAACCTTCCATCCTCTTCAACGTAACCATCTTGGCCCGTTCTCTCGCACCGTCTGTGGGATCTTTTTTACAGATAACAGGCTTGTATTTGCCTCACATGATGGTGATATTCATGTTGCATCTATCAACGTTCCCGGAGTCACACGGAGGGCTTACTTAGGTGATGTGGTAACTGACGGTGTCCTTGTAGATTTTGCTGGTTGTAACCAGTGGTGGGTCGGTCTTTATGCAGGTGTTCCAAACCGTGCCTTTCATGTACGAAATGGAAATACGGAAGAACTTGTATTCATTGGTGGCACACTGACTGACCCAGACGCAGTAATTGGCTGGCACTTACTCACAGACCTGACTGAGCATGTTGGTCGAATCCGCATAACAAATGATGATCTTGCGGTAGGTTTTACGAGAAGCAGGGTCATTGTATTTGATTTGAGAAGCCAAGTAATTTTAGGAGAGGTTGTAAGGCAGATAAGCGTTGGTGCAGCTGACGCTTATGATGGAGCTCTCGTGTTTGTAAATAGTAGGGGTGTAGCTAATGTACGCCAAGTGGGTAGTTTGCAAGAAATCTGTAGGTTTATGGCTCGTGGTGGGTCGCTTGGGTGTATGAATGGTGGCTATGGTTTTATGTGCATTGGGGGTGGGATTAGAGTTTGGGAATTGAATCATGGAGCGCACTTGTATATTTTAAGAGAACGGATAGGGGATGCAACCGCGCTCATTGCAGATGAACGGTATGTAGCAGCTTGTACCAATGATCACACCATTCATTTATGGGATTTTGGAGCACGTGACTAG 1335 47.27 MSTSSSSSSHDGGDGGNGGGGGGEFDEPPHARQRFNSGVWPEPFLEALASQIAIDSALTDGRLAAAPALFNIFQVCRTWRTVSQSDLLWQTLTRRIWRRNHLLHPTWYEEYIYRHRTTRNFRDRRYIYNTLNFPPNDNNNNNNNNEILSCRRLALSDYHLAAGFSDGSVRLFHLPTRHHVSTFHPLQRNHLGPFSRTVCGIFFTDNRLVFASHDGDIHVASINVPGVTRRAYLGDVVTDGVLVDFAGCNQWWVGLYAGVPNRAFHVRNGNTEELVFIGGTLTDPDAVIGWHLLTDLTEHVGRIRITNDDLAVGFTRSRVIVFDLRSQVILGEVVRQISVGAADAYDGALVFVNSRGVANVRQVGSLQEICRFMARGGSLGCMNGGYGFMCIGGGIRVWELNHGAHLYILRERIGDATALIADERYVAACTNDHTIHLWDFGARD 444
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02058 444 ProSitePatterns Trp-Asp (WD) repeats signature. 426 440 IPR019775 -
Ecan3g02058 444 Gene3D - 61 123 - -
Ecan3g02058 444 PANTHER WD40 REPEAT PROTEIN 12, 37 29 402 - -
Ecan3g02058 444 SUPERFAMILY F-box domain 68 119 IPR036047 GO:0005515(InterPro)
Ecan3g02058 444 MobiDBLite consensus disorder prediction 1 32 - -
Ecan3g02058 444 SUPERFAMILY WD40 repeat-like 132 440 IPR036322 GO:0005515(InterPro)
Ecan3g02058 444 Gene3D - 255 444 IPR015943 GO:0005515(InterPro)
Ecan3g02058 444 Gene3D - 127 251 IPR015943 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02058 - -
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ecan None None None TF SAP