AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02060 ATGGCTACACAATTCAGTCCTTGTTGTTCATCTTCCACCACTTTCTCACCTTCTTCCTCATCATCACTCAATCAAGAAGCATTTTCTTTTACAAAAATTTTGAATTTCTCAAGAAAATCTTCTGCCCACAAATGGGCTTTTAAAATTCAGTCAAGATTTAATCCAAAAAACAACTTTGAACTCAAATCCTCAAATGGGTATCCTCTTAATGCAGTTTCTTTGCAAGATGGTGCAGCAGAGAAGCCGTTAGCAAAAGATTTCGTGTTGCCAGAACAAACTGAAACCAATTTGAGTGTGACCATTGTTGGTGCTTCAGGCGATCTTGCCAAGAAAAAGATATTTCCTGCACTTTTTGCCCTCTTTTATGAAGATTGTTTACCTCAGACCTTCACTATATTTGGTTATGCCCGAACCAAAATGACCGATGAGGAGCTAAGGGAAATGATTAGTAGAACTCTAACTTGCAGAATCGACAAGAGAGAGAACTGTGGGGACAAAATGGAAGAGTTTCTTCAAAGATGCTTTTACCATTCTGGTCAATACAACTCTGAAGAAAATTTTGCAGAATTGGACACTAAGCTGAAACAGAAAGAGGAAGGAAAGTTGTCGAATAGGTTGTTTTACTTGTCAATACCTCCAAACATTTTTGTGGACGTGGTTCGTTGTGCCAGTAGCAAAGCTTCTTCCAAAACTGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGGCGTGACTCGGAATCGTCTGCTGAGCTAACAAGAAGCTTGAAGCAGTACTTGGCCGAGGATCAAATCTTTAGGATAGATCATTACCTGGGCAAGGAGCTAGTAGAGAATTTGTCAGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCGAGAAACTACATTCGCAGTGTACAATTTATATTTTCCGAAGACTTTGGTACAGAAGGGCGAGGAGGATATTTTGACAACTACGGAATTATCCGTGATATAATGCAAAATCACCTCCTACAAATATTAGCATTGTTTGCAATGGAAACACCTGTGAGTTTGGATGCTGAGGACGTTAGAAATGAAAAGGTCAAAGTCTTGAGGTCAATGAGGCGCCTAGTGCTCGATGATGTAGTCGTTGGTCAATACAAGGGTCATAGCAAGGGGGGGAAGACGTATTTAGGATACACAGATGACCCTACTGTCCCGAATCACAGTGTCACTCCAACATTTGCAGCAGCGGCTCTCTTCATTGATAATGCCCGGTGGGACGGTGTTCCATTTCTTATGAAAGCTGGAAAGGCCCTGAATACTAGACGGGCAGAGATAAGAGTTCAGTTCAGACATGTTCCCGGTAATCTCTACAAAAGAAACTTTGGAACAGATATGGATAAGGCTACAAACGAGCTTGTGCTTCGTGTGCAGCCTGATGAAGCCATTTATCTCAAGATTAATAACAAGATTCCTGGTATTGGAATGAGGCTCGACCGAAGTGACCTTAATTTGCTCTACAGTCTGAGGTATCCAAAGGAAATTCCTGATGCATACGAGAGGCTTTTACTGGATGCAATTGAAGGAGAAAGAAGATTGTTCATTAGAAGTGATGAGCTTGATGCTGCTTGGTCTATATTCACGCCATTGTTGAAAGAACTCGAAGCTAAAAAGATTGCACCGGAGTTGTATCCTTATGGTAGCAGAGGACCAGTCGGAGCACATTATCTGGCTGCAAAGTACAACGTCCGGTGGGGAGATCTTGCAGAAGAATGA 1749 41.57 MATQFSPCCSSSTTFSPSSSSSLNQEAFSFTKILNFSRKSSAHKWAFKIQSRFNPKNNFELKSSNGYPLNAVSLQDGAAEKPLAKDFVLPEQTETNLSVTIVGASGDLAKKKIFPALFALFYEDCLPQTFTIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMEEFLQRCFYHSGQYNSEENFAELDTKLKQKEEGKLSNRLFYLSIPPNIFVDVVRCASSKASSKTGWTRVIVEKPFGRDSESSAELTRSLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDVRNEKVKVLRSMRRLVLDDVVVGQYKGHSKGGKTYLGYTDDPTVPNHSVTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRVQPDEAIYLKINNKIPGIGMRLDRSDLNLLYSLRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELEAKKIAPELYPYGSRGPVGAHYLAAKYNVRWGDLAEE 582
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02060 582 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 96 578 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 PIRSF G6PD 85 580 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 FunFam Glucose-6-phosphate 1-dehydrogenase 268 577 - -
Ecan3g02060 582 NCBIfam glucose-6-phosphate dehydrogenase 98 577 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 269 275 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Ecan3g02060 582 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 93 575 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 Gene3D Dihydrodipicolinate Reductase; domain 2 268 577 - -
Ecan3g02060 582 PRINTS Glucose-6-phosphate dehydrogenase signature 259 287 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 PRINTS Glucose-6-phosphate dehydrogenase signature 311 328 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 PRINTS Glucose-6-phosphate dehydrogenase signature 416 442 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 PRINTS Glucose-6-phosphate dehydrogenase signature 329 345 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 PRINTS Glucose-6-phosphate dehydrogenase signature 235 248 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 101 279 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 Gene3D - 92 267 - -
Ecan3g02060 582 MobiDBLite consensus disorder prediction 1 22 - -
Ecan3g02060 582 FunFam Glucose-6-phosphate 1-dehydrogenase 93 267 - -
Ecan3g02060 582 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 282 576 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Ecan3g02060 582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 282 IPR036291 -
Ecan3g02060 582 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 269 576 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02060 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31506476 Ecan8g02639 Ecan-Chr8:37398967 dispersed
Ecan Ecan-Chr3:31506476 Ecan3g02060 Ecan-Chr3:31506476 tandem