AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ecan3g02068 | ATGTCATCTAAATCAACTAGTAGAACTCATTGTTCCAAAAGTAGTTCATCAAGGTTGAAACATGGTGCTAGAGTAGTATTACAGACCCCAATTGATGCTAAACTTCATGTCGATTTTGAAGAATCCGAAAGACAATTTGATTACTCGACTTCTGTCGATGTTAATGCCTCGACTTCAACTAGTAATGTTCCATCGTCGACTGTATCGTCTTATTTACAAAAAATGCAAAGAGGGAGTCAAATACAACCTTTTGGTTGTTTGATTGCCATTGATGAACAGAGTTTTGGTGTCATAGCGTATAGTGAAAATGCCTTAGAGATGCTTGATTTAGCTCCACACGCAGTCCCCAGTATAGAGCAACAAGAGGCTTTAACATTTGGGACGGATGTACGAACCCTTTTTAAATCCTCAAGTGCATCTGCACTTCAAAAAGCAGCTAACTTCCAAGAGGTTAATCTGTTGAATCCTATATTAGTTCATTGTAGGAGTTCAGGTAAACCGTTTTACGCCATTTTACATAGGAATGATGTGGGGTTGATGATAGATTTAGAGCCTGTGAATCCTGCAGATGTGCCCGTAACTGCTGCTGGAGCTTTAAAATCTTATAAGCTTGCAGCTAAATCAATATCTAGGTTACAATCTTTACAAAGTGGGAATATATCACGAATGTGTGATGTGTTGGTTAAAGAAGTGAGTGATTTAACCGGTTATGATCGTGTTATGGTTTATAAATTTCATGAAGATGAACATGGTGAAGTTATTGCTGAGTGTCAAAAACCCGATCTTGAACCTTATCTTGGCTTACATTACCCTGCTACTGATATCCCACAAGCTTCAAGGTTTCTTTTTATGAAAAATAAGGTTAGAATGATTTGTGATTGTGCGGCTCAATCCGTGAAGGTGGTTCAAACCAAGAGTTTGTCCCAGCCGTTGAACCTCTCTGGGTCTGCTTTGAGGGCACCACATGGATGTCATTCGCAGTACATGGCAAATATGGGCTCGATTGCATCTCTTGTGATGTCTGTAACGATCAATGAGGGTGATGATGACGATGAGGATGATGGTGAGGAATCTGAAAGTGGAATCTATCAGCAACAAAAGCAAAAGGGGAAAAGATTATGGGGTTTGGTGGTTTGTCATCATTCAACTGCTCGATTTGTACCATTTCCTTTGAGGTATGCATGTGAGTTTTTGATTCAAGTTTTTGGTGTTCAAATAAATAAAGAAGTTGAACTGGCTGGTCAATTGCGTGAAAAACATATCTTGAAAACACAAACCGTGCTTTGTGATATGCTTTTGAGAGTTGCTCCTATGGGGATCATGACTCAATCGCCTAATGTAATGGATCTTGTTACATGTGATGGGGCAGCTCTATACTACAAGAATAAGTGTTCATTACTCGGGATAACTCCAACAGAATCACAAATCAGAGATATAGCAAATTGGCTTCTGGAAGAGCATGCAGGGAGTACTGGTTTAAGTACGGATAGTCTCATGGATGCCGGATATTCAAATGCTTTGATTCTGGGACCAGCTGTTTGTGGAATGGCGGCTGTCAAGATTACCTCGAAAGATTTCCTTTTTTGGTTTCGGTCCCATACAGCTAAGGAAGTGAAATGGGGTGGGGCAAAACATGATCCTGATGATAAAGATGATGGAAGAAAAATGCATCCACGATCGTCATTTAAAGCGTTTTTGGAAGTGGTTAAGAACCGGAGTTTACCATGGGAAGATGTGGAAATGGATGCCATTCATTCTTTACAATTGATACTTAGGGGGTCTTTGCAAGATGACGAGATGGTAGTTGATGCTGCTGCTGATGATGATGGTATGAAAACAATATGTGTTCCCCCCATTGATACGAGCATACAACGGGTTGATGAACTGCGGGTTGTAGCTAATGAAATGGTTCGGCTTATTGAGACAGCTTCGGTTCCTATACTCGCAGTTGATGGTAATGGAAATATCAGTGGTTGGAACGATAAAATAGCCGAGATTACTGGATTGCCATTGGATCAAGCTGTTGGTGTCCCGCTAGTCAATTTGGTTGTCGATGACTCGGTTGATGAAGTGAAAATGATGCTCTCCTCTGCTTTACAAGGGATCGAGGAGAAAAATATTGAAATTAACCTTAAATGTTTCGGTAGTCAAGAAACAGATGGTCACGTGACACTTGTTACAAATGCTTGTTGCAGCCGTGATTTAAGTGAAACGATCGTAGGGGTATGCTTTGTCGGACAAGATCTAACAGGTCAAAAGTTAATCACAGACAAATACACAAAAGTCAAAGGTGATTATACTAGTATTGTGCGTAACCCATGTGCTCTTATTCCCCCGATCTTCATGATGGATGAGTATGGTAAATGCTTGGAATGGAATGATGCCATGGAAAAGTTAACCGGTTTGAAGAGGGAAGAAGCCAGCAACCGTATGCTTCTTGGTGAAGTTTTTACTGTTGGTAGTTTCGGCTGTCGGGTAAAAGAAGATACTCTGACAAGGCTCAAAATATTACTAAATGAGGTAATATCTGGGTTAGATTCAGATAAATTGTTGTTCGGGTTTTTTGACCAAAATGGTAAGTACGTGGAGGCGTTACTTTCTGCCACCAAAAGAGTTGATGGAGATGGAAAGATTACGGGGGTTTTGTGTTTTCTACATGTAACGAGCCCTGAGCTTCAACATGCCATGTTGATGCAGAAAATGTCTGAGCAGGCTGCTTTAAATAGCCTTACAAAGGTGTCTTATTTGCGCCATGAACTAAAAAGTGGTTTAAACGGGATCAAATGTATTGAGGACTTGATGGTAGCAACAGCATTGCGTGAAGACCAGAGACATATTGTGCATAAGAGTCACTTGTGTCGAGAACAATTAGCACAGATTGTAGATGATTCCGATATAGAAAGCATCGAACAATGCTATTTGGAAATGAAATGCGCGGAGTTTAAACTTGGGGAGTCTTTGGAGGTGGTTTTGAACCAAATCACGATCCTGAGCCGTGAACGGAAGGTGGAGGTCGTTTATGATGCACCCGAACAAGTGTTATCGTTATCTGTATTTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTCTTATCAAATGCTCTCAGTTTCACTCCTCAATATGAAGGATCTTCAATTCAGTTTCGTGTGACTCACAGGATGGAACACATAGGAACAAAAATTCAAGTTGCACATCTTGAATTTAGAATTACCCATCCGGCACCTGGGATCCCAGAGAAATTGATTCAAGATATGTTCCACACCAGCAGAAGTGTCTCAAGAGAAGGTCTTGGACTTTACATAAGCCAAAAGCTCGTGAAAATCATGAATGGAACGGTACAGTATCTCAGAGAAGCCGATAGAGCTTCTTTCATTGTTTTGATCGAGTTTCCAGTATCACACTTGTCGACTGCTGGCAGTAAACGCTCAAAAAGAAACTGA | 3447 | 40.67 | MSSKSTSRTHCSKSSSSRLKHGARVVLQTPIDAKLHVDFEESERQFDYSTSVDVNASTSTSNVPSSTVSSYLQKMQRGSQIQPFGCLIAIDEQSFGVIAYSENALEMLDLAPHAVPSIEQQEALTFGTDVRTLFKSSSASALQKAANFQEVNLLNPILVHCRSSGKPFYAILHRNDVGLMIDLEPVNPADVPVTAAGALKSYKLAAKSISRLQSLQSGNISRMCDVLVKEVSDLTGYDRVMVYKFHEDEHGEVIAECQKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAAQSVKVVQTKSLSQPLNLSGSALRAPHGCHSQYMANMGSIASLVMSVTINEGDDDDEDDGEESESGIYQQQKQKGKRLWGLVVCHHSTARFVPFPLRYACEFLIQVFGVQINKEVELAGQLREKHILKTQTVLCDMLLRVAPMGIMTQSPNVMDLVTCDGAALYYKNKCSLLGITPTESQIRDIANWLLEEHAGSTGLSTDSLMDAGYSNALILGPAVCGMAAVKITSKDFLFWFRSHTAKEVKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKNRSLPWEDVEMDAIHSLQLILRGSLQDDEMVVDAAADDDGMKTICVPPIDTSIQRVDELRVVANEMVRLIETASVPILAVDGNGNISGWNDKIAEITGLPLDQAVGVPLVNLVVDDSVDEVKMMLSSALQGIEEKNIEINLKCFGSQETDGHVTLVTNACCSRDLSETIVGVCFVGQDLTGQKLITDKYTKVKGDYTSIVRNPCALIPPIFMMDEYGKCLEWNDAMEKLTGLKREEASNRMLLGEVFTVGSFGCRVKEDTLTRLKILLNEVISGLDSDKLLFGFFDQNGKYVEALLSATKRVDGDGKITGVLCFLHVTSPELQHAMLMQKMSEQAALNSLTKVSYLRHELKSGLNGIKCIEDLMVATALREDQRHIVHKSHLCREQLAQIVDDSDIESIEQCYLEMKCAEFKLGESLEVVLNQITILSRERKVEVVYDAPEQVLSLSVFGDNLRLQQVLSDFLSNALSFTPQYEGSSIQFRVTHRMEHIGTKIQVAHLEFRITHPAPGIPEKLIQDMFHTSRSVSREGLGLYISQKLVKIMNGTVQYLREADRASFIVLIEFPVSHLSTAGSKRSKRN | 1148 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ecan3g02068 | 1148 | CDD | PAS | 643 | 709 | IPR000014 | - | |
| Ecan3g02068 | 1148 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Ecan3g02068 | 1148 | Gene3D | - | 953 | 1128 | IPR036890 | - | |
| Ecan3g02068 | 1148 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 400 | IPR016132 | - | |
| Ecan3g02068 | 1148 | SUPERFAMILY | GAF domain-like | 418 | 595 | - | - | |
| Ecan3g02068 | 1148 | CDD | PAS | 776 | 886 | IPR000014 | - | |
| Ecan3g02068 | 1148 | MobiDBLite | consensus disorder prediction | 346 | 366 | - | - | |
| Ecan3g02068 | 1148 | SMART | HKATPase-4 | 1020 | 1136 | IPR003594 | - | |
| Ecan3g02068 | 1148 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Ecan3g02068 | 1148 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Ecan3g02068 | 1148 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1020 | 1133 | IPR003594 | - | |
| Ecan3g02068 | 1148 | FunFam | Phytochrome | 628 | 759 | - | - | |
| Ecan3g02068 | 1148 | Gene3D | - | 200 | 571 | IPR029016 | - | |
| Ecan3g02068 | 1148 | Pfam | Phytochrome region | 423 | 597 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | ProSiteProfiles | Histidine kinase domain profile. | 915 | 1136 | IPR005467 | - | |
| Ecan3g02068 | 1148 | Gene3D | PAS domain | 778 | 892 | - | - | |
| Ecan3g02068 | 1148 | Pfam | PAS fold | 71 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Ecan3g02068 | 1148 | PIRSF | Phytochrome-conventional | 2 | 1143 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Ecan3g02068 | 1148 | FunFam | Phytochrome | 973 | 1134 | - | - | |
| Ecan3g02068 | 1148 | Pfam | GAF domain | 221 | 409 | IPR003018 | GO:0005515(InterPro) | |
| Ecan3g02068 | 1148 | NCBIfam | PAS domain S-box protein | 639 | 753 | IPR000014 | - | |
| Ecan3g02068 | 1148 | NCBIfam | PAS domain S-box protein | 779 | 816 | IPR000014 | - | |
| Ecan3g02068 | 1148 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 623 | 745 | IPR035965 | - | |
| Ecan3g02068 | 1148 | ProSiteProfiles | PAS repeat profile. | 632 | 702 | IPR000014 | - | |
| Ecan3g02068 | 1148 | Pfam | PAS fold | 635 | 748 | IPR013767 | GO:0006355(InterPro) | |
| Ecan3g02068 | 1148 | Pfam | PAS fold | 766 | 886 | IPR013767 | GO:0006355(InterPro) | |
| Ecan3g02068 | 1148 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 779 | 883 | IPR035965 | - | |
| Ecan3g02068 | 1148 | Gene3D | - | 415 | 588 | IPR043150 | - | |
| Ecan3g02068 | 1148 | CDD | HATPase-Phy-like | 1019 | 1132 | IPR044767 | - | |
| Ecan3g02068 | 1148 | FunFam | Phytochrome | 415 | 546 | - | - | |
| Ecan3g02068 | 1148 | ProSiteProfiles | PAS repeat profile. | 762 | 817 | IPR000014 | - | |
| Ecan3g02068 | 1148 | PANTHER | OS08G0260000 PROTEIN | 1 | 1010 | - | - | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 525 | 544 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 440 | 460 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 635 | 651 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 558 | 576 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 727 | 744 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 654 | 669 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | PRINTS | Phytochrome signature | 747 | 767 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Ecan3g02068 | 1148 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 982 | 1133 | IPR036890 | - | |
| Ecan3g02068 | 1148 | SUPERFAMILY | GAF domain-like | 199 | 407 | - | - | |
| Ecan3g02068 | 1148 | SMART | pas-2 | 764 | 835 | IPR000014 | - | |
| Ecan3g02068 | 1148 | SMART | pas-2 | 634 | 700 | IPR000014 | - | |
| Ecan3g02068 | 1148 | Gene3D | PAS domain | 622 | 763 | - | - | |
| Ecan3g02068 | 1148 | Gene3D | PAS domain | 76 | 322 | - | - | |
| Ecan3g02068 | 1148 | SMART | gaf-1 | 219 | 420 | IPR003018 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ecan3g02068 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ecan | Ecan-Chr3:24381938 | Ecan3g02068 | Ecan-Chr3:31553895 | dispersed | |
| Ecan | Ecan-Chr3:31553895 | Ecan9g03072 | Ecan-Chr9:37727226 | dispersed | |
| Ecan | Ecan-Chr3:31553895 | Ecan8g03693 | Ecan-Chr8:45194983 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ecan8g03693 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 60.0 | 0.0 | 1077.0 | |
| Ecan9g03072 | ACH | 35 | 1154 | Histidine Kinase gene family | AT2G18790 | 75.022 | 0.0 | 1797.0 | |
| Ecan1g03867 | ACH | 23 | 1150 | Histidine Kinase gene family | AT2G18790 | 74.314 | 0.0 | 1775.0 | |
| Ecan3g01289 | . | 9 | 1120 | Histidine Kinase gene family | AT1G09570 | 73.381 | 0.0 | 1762.0 | |
| Ecan3g02068 | . | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.247 | 0.0 | 1438.0 | |
| Ecan3g03680 | . | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 60.45 | 0.0 | 1371.0 | |
| Ecan5g02350 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 59.192 | 0.0 | 1055.0 | |
| Ecan6g01760 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 63.476 | 0.0 | 1489.0 | |
| Ecan6g01759 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 63.308 | 0.0 | 1482.0 | |
| Ecan6g01436 | . | 17 | 1120 | Histidine Kinase gene family | AT2G47430 | 34.117 | 0.0 | 564.0 | |
| Ecan1g02431 | . | 108 | 1056 | Histidine Kinase gene family | AT2G01830 | 68.252 | 0.0 | 1316.0 | |
| Ecan7g02671 | . | 21 | 1120 | Histidine Kinase gene family | AT2G47430 | 33.185 | 6.06e-159 | 497.0 | |
| Ecan8g00606 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 60.892 | 0.0 | 1422.0 |