AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02073 ATGCCGATGTTGCCGGCTCTCACTCTCTCCTTTCTTTTCCTCCTCTGTCTCTCCACCACAATAAATGCCCATAACATCACCCATATCCTCGACAAAAACCCAGAATTTTCAACCTTCAACCACTACCTCACTCTCACTCACCTAGCGGGAGAGATCAACCGTCGTCAGACCATCACGGTCTGCGCGGTTGACAATGCCGCAATGTCCGCTTTGGTTGCCAAAGGCCTGTCACTTGTAACTATAAAAAATGTACTTTCTCTTCATGTCTTTGCTGACTATTTTGGATCAAAAAAGCTTCATCAAGTCACTAAAGGGTCAACCTCCACTGCCACCATGTATCAAGCCACTGGTGAAGCCCCTGGCACCACTGGTTATGTTCATATTACTGATGTTAAAGGTGGTAAAGTTCAATTCACTCCAGAAGACAATCCATCCCAAACCGACGTCGTTTTTGTCAAATCCATCTTAGAAATGCCATACAACATCTCTGTAATCCAAATAAGTTCAATTCTAAACTCGCCAGAAGCCGAAGCACCAACTTCAGCACCAGACCTAAACTTAACATCATTACTACAAAGAGACGGATGCAAATCGTTTTACGATTTATTATCAACATCTGGAGCCATAGGTACATTTTTAAGTACAGTTGACGGGGGAGTAACTGTGTTTTGTCCAAGTGATGATGCCATTACTGCCTTTGCACCAAAATATAAAAACTTAACGGCAGACCAAAAAACGTCTCTGTTATTATACCATGGTGTTCCGGTTTATAATTCAATGGGGATGCTGAGATCAAGTAATGGGTTGATGAACACGTTGGCTACGGAAGGCAAAAATAAGTACGATTTCACCGTGCAAAATGATGGTAATGATGTGAAGTTGAAGACTAAAGTGGTGACTGCAACAATTACAGGTACAGTTGTTGATGATGAACCTGTTGCGGTTTATAAGATTGATAAGGTTTTGATGCCACGTGAGTTGTTTAAGGGTGCAGTGGTGGAGGCGGATGAGCCAGCGCCAACACCTAAGGCCGCAAAAATGAAAAAGAAGGCGACGAAGAAGGGGGATAGCGTGGAAGCGGAAGCACCTGGGCCGGACTCTTTGGATGACTATCATGATGATGATGCAGCGGATCAAAAGGCTAATTCTGGTGAGAGGGTGGTGGCATCAATGGTTTTAGCTTTGGTTCTCGCTGTCACATTCATTTTGTAA 1212 43.73 MPMLPALTLSFLFLLCLSTTINAHNITHILDKNPEFSTFNHYLTLTHLAGEINRRQTITVCAVDNAAMSALVAKGLSLVTIKNVLSLHVFADYFGSKKLHQVTKGSTSTATMYQATGEAPGTTGYVHITDVKGGKVQFTPEDNPSQTDVVFVKSILEMPYNISVIQISSILNSPEAEAPTSAPDLNLTSLLQRDGCKSFYDLLSTSGAIGTFLSTVDGGVTVFCPSDDAITAFAPKYKNLTADQKTSLLLYHGVPVYNSMGMLRSSNGLMNTLATEGKNKYDFTVQNDGNDVKLKTKVVTATITGTVVDDEPVAVYKIDKVLMPRELFKGAVVEADEPAPTPKAAKMKKKATKKGDSVEAEAPGPDSLDDYHDDDAADQKANSGERVVASMVLALVLAVTFIL 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02073 403 ProSiteProfiles FAS1-BIgH3 domain profile. 183 322 IPR000782 -
Ecan3g02073 403 Pfam Fasciclin domain 34 117 IPR000782 -
Ecan3g02073 403 Pfam Fasciclin domain 195 324 IPR000782 -
Ecan3g02073 403 SUPERFAMILY FAS1 domain 29 174 IPR036378 -
Ecan3g02073 403 ProSiteProfiles FAS1-BIgH3 domain profile. 23 171 IPR000782 -
Ecan3g02073 403 MobiDBLite consensus disorder prediction 351 379 - -
Ecan3g02073 403 MobiDBLite consensus disorder prediction 339 379 - -
Ecan3g02073 403 FunFam Fasciclin-like arabinogalactan protein 2 22 164 - -
Ecan3g02073 403 SMART fasc-3 59 175 IPR000782 -
Ecan3g02073 403 SMART fasc-3 221 325 IPR000782 -
Ecan3g02073 403 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6 396 IPR033254 GO:0046658(PANTHER)
Ecan3g02073 403 Gene3D FAS1 domain 21 171 IPR036378 -
Ecan3g02073 403 FunFam Fasciclin-like arabinogalactan protein 10 175 325 - -
Ecan3g02073 403 SUPERFAMILY FAS1 domain 190 324 IPR036378 -
Ecan3g02073 403 Gene3D FAS1 domain 193 324 IPR036378 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02073 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84814 Ecan3g02073 Ecan5g01593
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31578791 Ecan8g00052 Ecan-Chr8:513086 dispersed
Ecan Ecan-Chr2:43985243 Ecan3g02073 Ecan-Chr3:31578791 transposed
Ecan Ecan-Chr3:31578791 Ecan5g01593 Ecan-Chr5:29696338 wgd