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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02076 ATGCTGCAGATGTTCAAATTTTCTAAACAAGGAAGCTCATTATTGCCCGTTGCTCGCAAATTTCATGACTTGAGAGATAAAGCTAGAAGTGCATTCAAAGTTAGATCTACTACAAATATGGTAACGAACATGATAAAATCGTCAAAGGTCTCAGAAAATGAAGTTGATCAGGTTGATATGTTGAATGCCACGTATGATGCTTATGAAGGAGTTATTGTGAATATTAAAGATAATATGAATGAAAATGCCTTTATCAATCTACTTCAAACATCACTATCCCAATGGAGGCTGCAGGGGAAGAAAGGAGTTTGGCTAAAACTTCCTATTGAACATGTAAATCTTGTTGAACCTGCAGTGAAGGAAGGATTTCGGTACCATCATGCAGAATCAATATACTTGATGCTCGTGTATTGGATTCCTAAAACTAATAATACACTCCCACCAAATGCTTCCCACCGAGTTGGCGTTGCTTCTTTTGTCGTGAATGATAAAGGGGAGGTTCTTGTAGTCCAAGAGAAAAGTGGAGCGTTCAAAGGCACAGGAGTCTGGAAATTACCGACTGGTACTGTTGAGGAGGGTGAAGATATATGTGCAGCTGCAGTTAGGGAAGTCAAAGAAGAGACTGGGATTGATACAGAATTCGTAGAAGTCCTTGCATTCAGGCAAAGCCACAAATCATTCTTTACAAAGTCGGATCTAATGTTTGTTTGCATGTTAAAACCAAAATCTTTGGATATAGAGAAGCAAGATTCAGAGATTGACGCAGCACAGTGGATGTCAGTGGAGGAATACGCCAGCCAGCCCTTTATAGTAAAGCACAAATCCTTTGACTACATTGCTAAAATATGTATGGAAAAAATAGATAACAAATATGTTGGCTTCTCTGCATTGCCTACAGCAACTGCTACCTCTACTAAGAAGAGCTATTTGTACTCTCATTATCACGACCAGTGA 954 39.1 MLQMFKFSKQGSSLLPVARKFHDLRDKARSAFKVRSTTNMVTNMIKSSKVSENEVDQVDMLNATYDAYEGVIVNIKDNMNENAFINLLQTSLSQWRLQGKKGVWLKLPIEHVNLVEPAVKEGFRYHHAESIYLMLVYWIPKTNNTLPPNASHRVGVASFVVNDKGEVLVVQEKSGAFKGTGVWKLPTGTVEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHKSFFTKSDLMFVCMLKPKSLDIEKQDSEIDAAQWMSVEEYASQPFIVKHKSFDYIAKICMEKIDNKYVGFSALPTATATSTKKSYLYSHYHDQ 317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02076 317 PRINTS NUDIX hydrolase family signature 197 212 IPR020476 -
Ecan3g02076 317 PRINTS NUDIX hydrolase family signature 183 197 IPR020476 -
Ecan3g02076 317 ProSitePatterns Nudix box signature. 188 209 IPR020084 GO:0016787(InterPro)
Ecan3g02076 317 CDD Nudix-Hydrolase-12 152 283 - -
Ecan3g02076 317 SUPERFAMILY Nudix 119 280 IPR015797 -
Ecan3g02076 317 PANTHER NUDIX HYDROLASE RELATED 36 315 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Ecan3g02076 317 FunFam nudix hydrolase 2 58 144 - -
Ecan3g02076 317 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 153 292 - -
Ecan3g02076 317 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 237 261 IPR003293 -
Ecan3g02076 317 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 111 129 IPR003293 -
Ecan3g02076 317 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 149 167 IPR003293 -
Ecan3g02076 317 FunFam Nudix hydrolase 8 153 291 - -
Ecan3g02076 317 Pfam Nudix hydrolase domain 61 139 IPR040618 -
Ecan3g02076 317 Gene3D - 58 144 - -
Ecan3g02076 317 Pfam NUDIX domain 152 268 IPR000086 -
Ecan3g02076 317 ProSiteProfiles Nudix hydrolase domain profile. 151 283 IPR000086 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02076 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
Ecan3g02076 K03574 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31628852 Ecan9g01149 Ecan-Chr9:10845198 dispersed