AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02077 ATGGCGGCAATACTAGCTTCTAACAGCTGCTATTGCCGTGATGTGCAATCGGTAAATCAAGGGAGAACACCGGAAAATCTCAGCTTCTCAAGATCTGTTTCTATCCAGAAACTAGATAGGCATGAGTGTACTACTTTCCATAAAGTTGAGAGGTTTCGCAGGTTTCATGTTGAAATGCGTCAGACAGAATCCCCGACAAATTTTGGTACTAATGGTCGGCCTGTAAAGTTGGATACAAATGGTCAACCTGTGAAGTTGGGTGCTAATGGTAAACCGGTGAATTTGGGTCCCAATGGCCAACCTATAAAGTTGGGAAGCAAAGGTCAGCCGATCACTATGATTCCCACCAGCGAGGTCGGAAATAATAAGCCTATATCCAAACAAAGAGTCGGAACAGTGAACGGAACAGCGAACGGATCAACACGAGCTGTTAATGGGACAAGTCTTGTTAAGAGAGAACCCACACCACCATTAGTTAAGTCTGTAAAAGTTAAAGAGTTTGCATTCCCACCTTCTGATGAATTGAAGGTCTTGCCATCAGATGAAAGTTTCAGCTGGGCAAATGAAAATTATAATTCCGTTCAAAGATCAATAGACGTGTGGTCTTTTGTTCTTTCTCTGCGTGTTCGTGTTCTGTTGGACAATGCTAAGTGGGCATATCCTGGAGGCTTCACAGAAGACAAACAGAAAAGCAGAAGAAGAAAAACAGCTGCATGGTTAAGAGAGCGGGTGCTTCAACTTGGTCCAACTTTCATTAAACTTGGGCAGTTATCTTCAACAAGATCAGATCTATTTCCCCGTGAATTTGTTGACGAGCTTGCTAAATTACAGGACAGAGTTCCAGCTTTCTCGCCAGCAAAAGCAAAAGGTTTCATTGAGAAAGAGTTAGGAGCTCCAGTTGATGTAATCTTCAAGGTGTTTGAAGAGCGACCAATTGCAGCTGCTAGTCTTGGACAGGTACATCGTGCGATACTACATAATGGAGAGAAAGTAGTTGTTAAAGTTCAAAGACCTGGTCTGAAGAAACTTTTTGACATCGATTTAAAGAACTTAAAGCTAGTAGCAGAGTATTTTCAAAGAAGTGAATCTCTTGGTGGCCCAACAAGGGATTGGATAGGCATCTATGATGAATGTGAAAAGATCTTGTACCAGGAGATTGATTATATCAATGAAGGGAAAAATGCTGACAGATTTCGTCGTGATTTCCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACAAAGGTGCTGACATTGGAGTATGTTCCAGGCATCAAGATCAATAATTTAGATGTGATAAAAGAAAGGGGTTACAGTCGATCTCAAATTTCTTCACATGCCATTGAAGCATACTTGATTCAGATACTGAGAACAGGTTTCTTTCATGCTGATCCTCATCCTGGAAATCTTGCTATTGACGTGGATGAATCACTAATCTATTATGACTTTGGCATGATGGGGGAGATTAAGTCCTTTACAAGAGACAGATTGATGGATCTTTTTTATGCAGTCTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTAATAAGTCTTGAAGCACTTCAACCTACTGGAGACTTATCACCGGTTAGGAGATCGATACAATACTTTTTAGATAACTTGCTAAGCCAGTCACCCGATCAGGAGCAGACATTGGCTGCAATAGGCGAGGATTTATTTTCTATAGCAACAGATCAACCTTTCCGGTTCCCATCCACCTTCACTTTTGTAATCAGGGCATTTTCTACTCTGGAAGGAATTGGTTACTCACTCGATCCAGATTTTTCATTTGTCAAAATTGCCGCACCTTATGCACAGGAGCTGTTAGATCTCAAACAACAGCGGCCCAGTGGAACACAACTCGTTGCTGAAATGCGAAAACAAGCTGATGATGTAAGATCAAACACCGTGTCAATGCCTTACAGAGTTCAGCGGATTGAAGAGTTTGTGAAACAACTAGAAGTAGGAGACCTTAAACTTCGTGTGAGAGTCTTAGAGTCTGAGCGAGCAGCTAAAAAGGCAACAATATTGCAAATGGCAACCATGTACACAGTTTTGGGGGGAACCCTTGTAAACATCGGGGTCACATTTAGCACCCAAGGCAGCCAACTTGTAGCAAATGGGTCATTTGTTGCTGCAGGTATTTTTATAGCGCTGCTTATTAGGTCCATGCAAAGGGTGAAGAAACTTGATAAATTTGAAAAGATGATTTAG 2235 41.39 MAAILASNSCYCRDVQSVNQGRTPENLSFSRSVSIQKLDRHECTTFHKVERFRRFHVEMRQTESPTNFGTNGRPVKLDTNGQPVKLGANGKPVNLGPNGQPIKLGSKGQPITMIPTSEVGNNKPISKQRVGTVNGTANGSTRAVNGTSLVKREPTPPLVKSVKVKEFAFPPSDELKVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWAYPGGFTEDKQKSRRRKTAAWLRERVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPAKAKGFIEKELGAPVDVIFKVFEERPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLKNLKLVAEYFQRSESLGGPTRDWIGIYDECEKILYQEIDYINEGKNADRFRRDFRNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNLDVIKERGYSRSQISSHAIEAYLIQILRTGFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSFTRDRLMDLFYAVYEKDAKKVMNSLISLEALQPTGDLSPVRRSIQYFLDNLLSQSPDQEQTLAAIGEDLFSIATDQPFRFPSTFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKQQRPSGTQLVAEMRKQADDVRSNTVSMPYRVQRIEEFVKQLEVGDLKLRVRVLESERAAKKATILQMATMYTVLGGTLVNIGVTFSTQGSQLVANGSFVAAGIFIALLIRSMQRVKKLDKFEKMI 744
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02077 744 CDD ABC1-ADCK3-like 275 522 - -
Ecan3g02077 744 MobiDBLite consensus disorder prediction 116 152 - -
Ecan3g02077 744 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 113 677 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Ecan3g02077 744 Pfam ABC1 atypical kinase-like domain 275 521 IPR004147 -
Ecan3g02077 744 MobiDBLite consensus disorder prediction 116 148 - -
Ecan3g02077 744 SUPERFAMILY Protein kinase-like (PK-like) 277 525 IPR011009 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02077 K03688 ubiquinone biosynthesis protein
Ecan3g02077 K08869 aarF domain-containing kinase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31643348 Ecan6g01339 Ecan-Chr6:24582807 dispersed
Ecan Ecan-Chr3:31643348 Ecan1g02031 Ecan-Chr1:34253219 transposed