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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02079 ATGTTTCATACATTTTTAGCGATTGTTGTTATAATTTCTTTGTTAAAAACTCACGTTGCTGGGATTAGATTTGTGATCGATAGAGAAGAATGTTTGTCTCATAATGTTGATTATGAGGGAGATACGGTTCATGTTTCTTTTGTTGTAATTAAGGCAGAATCGCCATGGCATTTTTCCGAGGACGGTGTTGATCTAGAGATAAAAGGCCCGGATGGAGAGGAGGTGTACAATGTACATGATAAATCTAGCGAGATGCACGAGTTTGTGGCTCAAAAGAAAGGTTTATACCATTTTTGCTTCATAAACAGGTCTCCATATCACGAGACCGTTGACTTTGATGTTCAAGTTGCCCATTTTGGATCCAACGATCAACATGTAAAAGACGAGCATTTTAAGCCATTGTTTGATCAAATAACAAAATTGGAGGAAGCACTTTACAACATTCAGTTTGAACAGCATTGGTTAGAGGCAGAGAACGATCGACAGGCAATTATAAATCAGAAAATGAGTAAGAGAGCAGTCCAGAAGGCTCTAATCGAGTCTGCAGCACTGATTGGAGCCAGCGTCCTGCAGGTCTATCTTCTACAACGTCTGTTTGAGCGAAAAATGGGGTTCATCTAG 621 39.61 MFHTFLAIVVIISLLKTHVAGIRFVIDREECLSHNVDYEGDTVHVSFVVIKAESPWHFSEDGVDLEIKGPDGEEVYNVHDKSSEMHEFVAQKKGLYHFCFINRSPYHETVDFDVQVAHFGSNDQHVKDEHFKPLFDQITKLEEALYNIQFEQHWLEAENDRQAIINQKMSKRAVQKALIESAALIGASVLQVYLLQRLFERKMGFI 206
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02079 206 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 6 200 IPR015720 GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0007030(PANTHER)|GO:0030134(PANTHER)
Ecan3g02079 206 Pfam emp24-gp25L-p24 family-GOLD 28 200 IPR009038 -
Ecan3g02079 206 ProSiteProfiles GOLD domain profile. 29 116 IPR009038 -
Ecan3g02079 206 SMART EMP24-GP25L-2 21 200 IPR009038 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02079 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84816 Ecan3g02079 Ecan5g01597
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31660731 Ecan8g00043 Ecan-Chr8:453831 dispersed
Ecan Ecan-Chr3:31660731 Ecan5g01597 Ecan-Chr5:29744607 wgd