AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02080 ATGACAATCTTCCCCGGCGTGAAGTACACCCTGGAACACCGGTGGAAAACCGACGACGCGTGGTACACTTGCGGTGTCATTCTCGAAGACGGCAAACATCTCCGTGTTAAATTTGAAGAAGAAGAAGGAGCATCGAAAACTACAGAAAACGACGAGGTTTTCTCCATCTCCGATTTCTCAAATCAAGAACAAATCGATGCTTTTCGGAACAAATTCCGTCCGGTTTCTGCTCCGATTGAAGATAATGAGTGTGCTAAAGTGATTCAAGGCATGATTGTTTGTGCTGCATATTCAGATGACGGAAATTATCGTTACTTTGATGCCGTTGTTGACGCTGTTTGTTACAAAGAACATTCACCTGAGAAATGTGTATGCAAGTATTTGCTGTTCTGGAAGCATGGTCCCGGAGAGGGTAATATTACTAAAACTAATCTTCAGGATATATGCCTCATCAGGCATGGTGCTGTTGATCCTATACTGGCCGACTTCACAAAACTTGTAAAGGAAAAACTTAAGGGGGATTTTTCTCAGTTTATTCTGATCCCCAAGAGCAGCTCATTTTTGTCTAAATCAAATGAAACTTCAGACAAGTCACAGGAGTTTGGCAGTGCAAGACAGAATTCTCAAGTTGGATTCCATGAAGGGAAGGGAAGGTTCTGGTCTGAATTAATTGATCAGGAAAGAGATGTGGGAGGACTTGAAGAAATCGGTTGTCATCACTACTTAATACTGGAGAATCTGGAGAAAGATCTGTGTCCAAACGTGATGACCGAGTTCATACACCAACAAACTTCAATCGCAATACATGCATATGTTTTTCCAAGCTTGGCAGTGGAAACTTATGCGAGAGGAGCAGTTGTGGTGGATAGCAGATCAAAGCTTAAGAGATTATATGAGTTCATTAGCAACCCAAATCATTTCATTATATCTTTATCTGGAAGGCCATGGGTAATAGCTGAAGACACATTTTGGATTGGAACTTTTGACATCAACTTGCGAAGCTTGCAACCAAAGTTTGAGAAAAAAAATACAGGGAGCGAGTTGACGGTTGTCTGGACAGGAACAAAACAATATATGACTGCTAAACGGCTGCACGGTCTATATATGGAATTTCGAAGTCATCTAAATGGACTTCAGCAGAGATTAGGGATGGAGGAGGAGAAGGAGAAGGAGAAACAGGACTGCTATCGACCAAAAAAAGTTTAG 1206 41.63 MTIFPGVKYTLEHRWKTDDAWYTCGVILEDGKHLRVKFEEEEGASKTTENDEVFSISDFSNQEQIDAFRNKFRPVSAPIEDNECAKVIQGMIVCAAYSDDGNYRYFDAVVDAVCYKEHSPEKCVCKYLLFWKHGPGEGNITKTNLQDICLIRHGAVDPILADFTKLVKEKLKGDFSQFILIPKSSSFLSKSNETSDKSQEFGSARQNSQVGFHEGKGRFWSELIDQERDVGGLEEIGCHHYLILENLEKDLCPNVMTEFIHQQTSIAIHAYVFPSLAVETYARGAVVVDSRSKLKRLYEFISNPNHFIISLSGRPWVIAEDTFWIGTFDINLRSLQPKFEKKNTGSELTVVWTGTKQYMTAKRLHGLYMEFRSHLNGLQQRLGMEEEKEKEKQDCYRPKKV 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02080 401 PANTHER SAWADEE PROTEIN 8 388 - -
Ecan3g02080 401 MobiDBLite consensus disorder prediction 188 207 - -
Ecan3g02080 401 Gene3D - 79 151 - -
Ecan3g02080 401 Pfam SAWADEE domain 8 149 IPR032001 GO:0003682(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02080 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31663100 Ecan3g02085 Ecan-Chr3:31691753 dispersed
Ecan Ecan-Chr3:31663100 Ecan3g02081 Ecan-Chr3:31663515 tandem