AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02086 ATGGAGGGGTTAAACTATGTGACATTTAAGGTTCAGAGTGGCTCAATAAACCCTGCTGCTGGTGGTTCATCTAGATTCAAATCTTTCAAGCTTGCATCAGTTCAAATGGACAGTCACAGAACCTGTCTTCCTTGTATTAGAGCTCAGCAGTATGGGACAAAGGATGGGCCTTTAGTTGCTACTGCATCCAGTGATTCAGTAATTGAAGAACTCAAAAGTAAAGATTGGGAAATAGGGGTTCTAAAGGATGAATTAGCTGCAACACAAGGGATTCGGATTAGAAGGCGACCGCCAACAGGACCTCCTTTGCATTATGTTGGACCGTTTGAGTTTCGGTTGCAGAATGAAGGGAATACTCCTAGGAATATCTTAGAGGAAATTGTATGGAACAAGGATGTAGAGGTTACGCAGATGAAAGAGAAATATCCACTATGTTTGCTAAAGAAGGCTCTCGACAATGCACCTTCTTCCAGAGATTTTGTAGGAGCTCTTAAGGGGTCGTATTTACGAACGGGTTTGCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCAAGTAGAGGTGTTCTAAGGGAAGATTTTCATCCTGTTGAGATAGCAAAAGCTTATGAGAAAGGTGGAGCAGCATGCCTAAGTGTTTTGACCGATTCAAAATATTTTCAGGGAAGCTTTGAGAATCTAGAGGCTATAAGGAGTGCAGGAGTCAAGTGCCCTCTTTTGTGCAAAGAGTTCATTGTGGATGCATGGCAGTTGTATTATGCGCGAACAAAGGGTGCTGATGCTGTTCTGTTAATTGCAGCTGTTTTACCAGATCTTGACATCAGATATATGCTTAAGATATGTAAATTGATTGGACTGACGGCCCTCGTTGAGGTCCATGATGAGAATGAAATGGATCGCATGCTAGGAATTGATGGAATTGAACTTATTGGCATCAACAATCGTAACCTTGCAACATTTGAAGTCGATATTAGTAACACAAAGAAGTTGCTTGAAGGTGAGCGTGGAGAGAAGATTCGACAGAAAGACATAATAGTGGTCGGGGAGTCCGGGCTGTTTACTCCTACTGACATTACATATGTACAGGAAGCTGGTGTGAAAGCGATATTGGTCGGTGAGTCGATTGTGAAGCAGAAAGATCCGAGAAAAGGAATTAGTGAACTTTTTGGAAAAGATATATCAGCTTAG 1188 41.92 MEGLNYVTFKVQSGSINPAAGGSSRFKSFKLASVQMDSHRTCLPCIRAQQYGTKDGPLVATASSDSVIEELKSKDWEIGVLKDELAATQGIRIRRRPPTGPPLHYVGPFEFRLQNEGNTPRNILEEIVWNKDVEVTQMKEKYPLCLLKKALDNAPSSRDFVGALKGSYLRTGLPGLIAEVKKASPSRGVLREDFHPVEIAKAYEKGGAACLSVLTDSKYFQGSFENLEAIRSAGVKCPLLCKEFIVDAWQLYYARTKGADAVLLIAAVLPDLDIRYMLKICKLIGLTALVEVHDENEMDRMLGIDGIELIGINNRNLATFEVDISNTKKLLEGERGEKIRQKDIIVVGESGLFTPTDITYVQEAGVKAILVGESIVKQKDPRKGISELFGKDISA 395
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02086 395 FunFam Indole-3-glycerol phosphate synthase chloroplastic 116 394 - -
Ecan3g02086 395 SUPERFAMILY Ribulose-phoshate binding barrel 131 390 IPR011060 -
Ecan3g02086 395 PANTHER TRYPTOPHAN BIOSYNTHESIS PROTEIN 64 391 IPR045186 GO:0000162(PANTHER)|GO:0004425(InterPro)|GO:0004425(PANTHER)|GO:0004640(PANTHER)
Ecan3g02086 395 Hamap Indole-3-glycerol phosphate synthase [trpC]. 122 390 IPR013798 GO:0004425(InterPro)
Ecan3g02086 395 Pfam Indole-3-glycerol phosphate synthase 124 388 IPR013798 GO:0004425(InterPro)
Ecan3g02086 395 CDD IGPS 160 388 IPR013798 GO:0004425(InterPro)
Ecan3g02086 395 ProSitePatterns Indole-3-glycerol phosphate synthase signature. 176 194 IPR001468 GO:0004425(InterPro)|GO:0006568(InterPro)
Ecan3g02086 395 Gene3D Aldolase class I 116 394 IPR013785 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02086 K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84817 Ecan3g02086 Ecan4g02611
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31695700 Ecan4g02611 Ecan-Chr4:35965072 wgd