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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02108 ATGGCAAAGCAAAAGATTGTAGTGAAGGTGACCATGAACTGCGAGAAGAAATCTCGTAAGGCTTTGAAGATTGCGGTTGGTCTTTTTGGAGTGGAGTCCGTGTCGTTTGATGGATCAGAAAAAGACAAGATAGTGGTGATTGGTGAAGGAACCGACCCGGTTGAGCTAACAAAGTTGCTAAGGAAAGGTGTTGGATATACTCATTTGGTTAGTGTCGGTCCCGTCGAAGAGAAGAAACCTGAAGTTAACGAAACGACGAATCCCACGATCCTGCCTTTGCAAATTAATCCTTACCAATATTGCTATAATGGTTATGGCATGCCCTACTACTATTGTTATGAACTACGAGATTTCATCAACTAA 363 42.15 MAKQKIVVKVTMNCEKKSRKALKIAVGLFGVESVSFDGSEKDKIVVIGEGTDPVELTKLLRKGVGYTHLVSVGPVEEKKPEVNETTNPTILPLQINPYQYCYNGYGMPYYYCYELRDFIN 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02108 120 Gene3D - 1 78 - -
Ecan3g02108 120 ProSiteProfiles Heavy-metal-associated domain profile. 3 72 IPR006121 GO:0046872(InterPro)
Ecan3g02108 120 PANTHER OS04G0464100 PROTEIN 4 86 IPR044296 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02108 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31840046 Ecan3g02108 Ecan-Chr3:31853981 dispersed
Ecan Ecan-Chr3:31849232 Ecan3g02108 Ecan-Chr3:31853981 tandem