AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02110 ATGGCGTCGTCTATCGTCGGACCATCTCATTTCTTCTCGTCTTCCGGCATTGTCACCGCCCGTCCATCATCATCATCCTGCCGGACCTTATCATTTTCATCTTCTTCTAGTCTCTCCGGTGACAAAATATCATCATCATCCGTACAACGACGACGTCGTTTTGCAAGTAGAAGTTCCGTGATTGTTTCTCCTAAAGCTGTTTCTGATTCTCAAAATTCGCAGACATGCCTTGATCCTGACGCTAGTCAAAGTGTGTTGGGGATAATACTTGGAGGTGGAGCTGGTACACGGCTTTATCCTTTGACAAAGAAGAGGGCAAAACCCGCTGTTCCTTTGGGAGCAAACTACAGGCTTATTGATATTCCTGTCAGCAACTGCTTGAACAGCAATATTTCAAAGATTTATGTTCTTACACAGTTCAACTCTGCGTCACTCAATCGCCACCTTTCACGGGCTTATGCAAGTAACATGGGTGGTTACAAAAACGAAGGGTTTGTTGAAGTCCTTGCTGCTCAACAGAGTCCCGAGAACCCAAATTGGTTTCAGGGTACTGCTGATGCTGTAAGGCAATATTTGTGGCTATTTGAAGAGCATAATGTTTTGGAGTATCTAATCCTTGCTGGAGACCATCTATATCGTATGGATTATGAGAAATTTATTCAAGCTCACAGAGAAACTGATGCTGATATCACTGTAGCAGCTCTGCCAATGGATGAAAAACGTGCCACTGCATTTGGTCTGATGAAGATTGATGAAGAAGGGCGTATAATTGAATTTGCAGAGAAACCAAAGGGAGAGCAGCTGAAAGCTATGAAAGTTGATACCACAATATTAGGACTTGATGAAGAGAGAGCTAAAGAGATGCCATATATTGCTAGTATGGGTATATATGTTGTCAGCAAAGATGTGATGTTGAATTTGCTGCGAGATAAGTTCCCCGGAGCAAATGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTAAGAGTACAAGCGTATCTTTATGATGGCTACTGGGAAGATATTGGTACCATTGAGGCTTTCTATAATGCCAATTTGGGAATTACAAAAAAGCCAGTGCCAGATTTCAGCTTCTATGACCGTTCGTCCCCCATTTACACCCAACCCCGATACTTGCCTCCTTCCAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGGTGTGTGATTAAGAACTGCAAAATTCACCATTCTGTTGTGGGACTTAGATCTTGCATAGCTGAAGGTGCAGTCATTGAAGATTCGCTGCTAATGGGAGCAGATTATTATGAGACTGATGCTGATAGGGAGCTTCATGCTGCAAAAGGTAGTGTTCCAATTGGTATTGGGAAAAACACTCATATCAAAAGAGCAATCATTGACAAAAATGCACGCATAGGAGACAATGTGAAGATTATAAACAGTGATAATATTCAAGAAGCAGCAAGGGAAACAGAAGGGTACTTTATAAAAAGTGGAATCGTGACAGTTATCAAAGACGCACTGATTCCTTCCGGCAGTGTAATTTAG 1548 42.12 MASSIVGPSHFFSSSGIVTARPSSSSCRTLSFSSSSSLSGDKISSSSVQRRRRFASRSSVIVSPKAVSDSQNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLNLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADRELHAAKGSVPIGIGKNTHIKRAIIDKNARIGDNVKIINSDNIQEAARETEGYFIKSGIVTVIKDALIPSGSVI 515
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02110 515 SUPERFAMILY Trimeric LpxA-like enzymes 378 515 IPR011004 -
Ecan3g02110 515 FunFam Glucose-1-phosphate adenylyltransferase 381 515 - -
Ecan3g02110 515 CDD ADP-Glucose-PP 96 345 - -
Ecan3g02110 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 292 302 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ecan3g02110 515 FunFam Glucose-1-phosphate adenylyltransferase 66 380 - -
Ecan3g02110 515 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 65 380 IPR029044 -
Ecan3g02110 515 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 476 IPR029044 -
Ecan3g02110 515 CDD LbH-G1P-AT-C 383 509 - -
Ecan3g02110 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 180 188 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ecan3g02110 515 NCBIfam glucose-1-phosphate adenylyltransferase 85 479 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Ecan3g02110 515 Pfam Nucleotidyl transferase 87 360 IPR005835 GO:0009058(InterPro)
Ecan3g02110 515 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 91 110 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Ecan3g02110 515 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 44 515 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Ecan3g02110 515 Gene3D Hexapeptide repeat proteins 381 515 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02110 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31873008 Ecan6g00199 Ecan-Chr6:2431790 dispersed