AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02116 ATGGCTGACAAACCAGATAAAAGTGGAGTTGTAGCTTCAGAAAATTGCTCTAACAATATGGGACCAAGTCAAGAAGATTCAAGCTCCGGTATCCGGACGGTGGAGACACTGCTACGGCTGTTACCGGTGGGGCTGTGTGTGGCAGCGCTAGTCGTTATGATTAAGGATTCGGAAACGAATGAATATGGCTCTTTGTCTTACTCTAACCTCACTGCTTTCAGGTTTTTGGTGAATGCTAATGGCATATGTGCTGGTTATTCGCTACTATCGGCTGCTGTCACTGCAATACCCCGCCCTATAACGATGTGTCGAGCCTGGACCTTTTTCCTCCTTGACCAGATTTTAACATATCTAACTCTGGCTGCTGTTGCGGTGGCAACGGAGGTGGCATTTCTAACATACAAAGGTGATGTGGCGGTGACATGGAGTTCAGCGTGTGGAAGCTATGGCCACTTCTGCAAACAAGCAACCGCATCAATCATAATAACTTTCGTGGTGGTGCTTTGCTATGTTTCATTGTCACTCATTTCATCATACAGGCTCTTCAGCAAGTATGATGCACCGGTTGGCTACCACAACAAAGGGATCGAGATCGTTGACTTTGGGAATTAA 612 46.41 MADKPDKSGVVASENCSNNMGPSQEDSSSGIRTVETLLRLLPVGLCVAALVVMIKDSETNEYGSLSYSNLTAFRFLVNANGICAGYSLLSAAVTAIPRPITMCRAWTFFLLDQILTYLTLAAVAVATEVAFLTYKGDVAVTWSSACGSYGHFCKQATASIIITFVVVLCYVSLSLISSYRLFSKYDAPVGYHNKGIEIVDFGN 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02116 203 NCBIfam plant integral membrane protein TIGR01569 38 179 IPR006459 -
Ecan3g02116 203 PANTHER CASP-LIKE PROTEIN 4A4 32 183 - -
Ecan3g02116 203 MobiDBLite consensus disorder prediction 1 28 - -
Ecan3g02116 203 Pfam Casparian strip membrane protein domain 29 169 IPR006702 -
Ecan3g02116 203 MobiDBLite consensus disorder prediction 11 28 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02116 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:31976538 Ecan8g02469 Ecan-Chr8:36103486 dispersed