AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02118 ATGAGAGAAGAAGGAATGAGCTCATCATCAGCAGCAGACCCATTAATTTTCCCCAATTCCCCTCAACCACCTACCCCTGCTGCCAGTTCTGCCGGGGCATCGTCACCAGCTGTTGCCACAAATGCTGGCAGTACAGATTGGTTGGGTCAAGGTCAGGGATCGAAAGCAGGTTCTCTATCTCGGATTAGTTCACAGCCTATGTGGATTTCATTGAGTACAGGTGCATGTGGGTCAGCTCTTGGATCATCCCAACCTTCATGTAGACCATGGGAAAGGGGTGATCTTCTAAGACGATTATCCACATTTAGGCCTGCATATTGGTTTGGGAAGCCTAAGGTTGCTAGCTCGCTTGCCTGTGCTAGGAGAGGCTGGGTGAATGTGAATTTAGATACGATTCAATGTGAGTCTTGTGGCTCCAACCTGAAGTATAATGCACCAGAATCATGGACCTCCACAGAAGGTGAAAATGGCGGAGAAGAATTTGCCAATCAGCTCAATGAAGGACACAGTGCCACCTGTCCTTGGAGAGGAAACAGTTGTGCTGAAAGTTTAGTGCAATTTCCGCCTACTCCTCCATCAGCCCTGATAGGTGGCTACAAGGATCGTTGTGATGGACTTCTTCAGTTTCCCTATCTACCTGTTGTGTCTGCTTCTGCTCTCGACCAGATGAAGTATTCCAGGGGTCCGGAAATTGACCGCTTTCTGGTTCAGGCATCTGCTTATCTACCAGACGTAACATCTGATATGGAAACAACCGTTTATTCACGTGCCCAGAAGTTGATAAGCCTTTGTGGATGGGAACCAAGGTGGCTCTCAAATGCTCAAGACTGTGAAGAGCAGTCTGCTCAGTCGGCTAGAAATGGTGGTTCTTTTAATCCCATTAAAGATCGTGACCCCATGAAGAAAGTATTACATGCTTCAATAAAAAAAGCTCCACGGCACCCCACTCCAAGATTTGAATCTAGGTCACCATTGTTAGACTGTAGCTTATGTGGGGCCACCGTGAGAATATTGGATTTCATTCGTGTCAATCGTCCTGTTCGTTATGCTCCTAACAACATTGATGCTCCCGAAACAAGTAAAAAGATGGCACTCACTCGTGGTATGAGTGCTGCCAGTGGAATTAGCGGGTGGGTGGCTGATGGTGGCATGGAGAAAGAGCAGACGGAAGACATTGATGAAGCTGCAACCACTGGGGATGGGAAGTCTATGTCAAATATTGGGATGGATTTAAATCTTACAATGGGAGGTGGATTTTCTACGGCTCATGGGCACAAGAGGCCTATATCGGAACTCTACCAAGATGCAAGTATAGGGAGAGATCTATTCATCGGGCAGCCAGCTGGCAGTGAGGTAGGTGATCGTGCAGCATCATTTGAATCCCGTGGTCCCACTACTTTCAGAAGAAATATGGATGAAGGTGGATCCACTGTTGATAGGCCACCCGGGATGATTCGCCAGGCGGATAGTGTCGAGGGTGTTGTCATTGATCGTGATGGTGATGAAGTCAGCGACACCGAACCGTCGGCTGGCCCATCTAAACGTGCATGTGAATCTCATGCTTTGGAGCCAAATGAACCATCATCTGGTGTGGGTCCTAGCCAGACCTTGTATTTTGATATTGATAGGGCTGGTCCATCTATCCAAGGCCATGAACAAGCAGGAAGAGCTTCATCTGTTATTGCAATGGATACAATTTGTCATAGTGAAGATAATGACTCCATGGAAAGTGTCGAAAATCATCCTGCTTTTGTGGACGAGGTTAGCTACCCTGCTGGATCATCAGGCAAAAGCCCGGATCTTAATGATAATTCTGATTTAAACGTCAGTATTCCTGCTCAGCAAAGTACGTGTCCGCCTGTGATTCGAGTCGCGGGCGAGATTGGTGTTAGCAGCACCAATGATGAAGAAGTATTGAACACTGAGAACACCACAGTTCACAGGAGGGATGGTCCTAGTTTTGCTATTAGTGGTGGTAGTGTTGGAATGGGTGCTAGTCATGAAGCAGAAATTCATGGTTCTGACTTTTTGATTGACCGGACAGTAAGCGTTGTTGGTGACATGGAACCGATTGCTGGTGTGACCGAGAACCAAGGTCAAACTGATGAATTTGTTCCCGAAGAACTGCAGCAAGAATATTCCGGAAGGGCAGATAGCGGGTCAAAGATTATTGGTTCAGTCAAGGTGGATTCTGTTGAGAGTGGTGAAAAGACCAGTGACTTGAATCTCTTACCACATGAGCAAGATTCCCATCCTTCTCTTTCTTGCAATGCAGTTGTATATTCAGGTCTTGAAGTATCGAAAGATGAAGTGATGCAGGGAGGTAAGTCATCTCCTACCGACGAATGTGGTTACCCAAGTTACACGCCTGCAAACGGAATAGGGCCTCCTAATGGAGAAAGCAACTTTGAAGAACCTGTGGAGTTTGATCCAATTAAGCATCATAACTTTTTCTGCCCTTGGGTGAATGGCAACGTCGCTGCAGCTGGAGTTATTAACAATAATGGTGCTAGCTCAAGTGCTAGTGCTTTAGCTCTTTGTGGCTGGCAGCTGACGTTAGATGCTTTAGATGGATTCCAAGGTCCTGAACAAAACCAAACCGTTGAATCCGAGTCAGCTGCTTCTCTGTATAAGGATGACAATCAAGTTTCTGGTAAGAAGCTTATTGCACGCCATTCCTTTAATAGAAGTCGTGGACAAAATTAG 2706 46.49 MREEGMSSSSAADPLIFPNSPQPPTPAASSAGASSPAVATNAGSTDWLGQGQGSKAGSLSRISSQPMWISLSTGACGSALGSSQPSCRPWERGDLLRRLSTFRPAYWFGKPKVASSLACARRGWVNVNLDTIQCESCGSNLKYNAPESWTSTEGENGGEEFANQLNEGHSATCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPYLPVVSASALDQMKYSRGPEIDRFLVQASAYLPDVTSDMETTVYSRAQKLISLCGWEPRWLSNAQDCEEQSAQSARNGGSFNPIKDRDPMKKVLHASIKKAPRHPTPRFESRSPLLDCSLCGATVRILDFIRVNRPVRYAPNNIDAPETSKKMALTRGMSAASGISGWVADGGMEKEQTEDIDEAATTGDGKSMSNIGMDLNLTMGGGFSTAHGHKRPISELYQDASIGRDLFIGQPAGSEVGDRAASFESRGPTTFRRNMDEGGSTVDRPPGMIRQADSVEGVVIDRDGDEVSDTEPSAGPSKRACESHALEPNEPSSGVGPSQTLYFDIDRAGPSIQGHEQAGRASSVIAMDTICHSEDNDSMESVENHPAFVDEVSYPAGSSGKSPDLNDNSDLNVSIPAQQSTCPPVIRVAGEIGVSSTNDEEVLNTENTTVHRRDGPSFAISGGSVGMGASHEAEIHGSDFLIDRTVSVVGDMEPIAGVTENQGQTDEFVPEELQQEYSGRADSGSKIIGSVKVDSVESGEKTSDLNLLPHEQDSHPSLSCNAVVYSGLEVSKDEVMQGGKSSPTDECGYPSYTPANGIGPPNGESNFEEPVEFDPIKHHNFFCPWVNGNVAAAGVINNNGASSSASALALCGWQLTLDALDGFQGPEQNQTVESESAASLYKDDNQVSGKKLIARHSFNRSRGQN 901
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02118 901 MobiDBLite consensus disorder prediction 497 535 - -
Ecan3g02118 901 MobiDBLite consensus disorder prediction 1 59 - -
Ecan3g02118 901 MobiDBLite consensus disorder prediction 26 59 - -
Ecan3g02118 901 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 899 - GO:0005634(PANTHER)
Ecan3g02118 901 MobiDBLite consensus disorder prediction 449 483 - -
Ecan3g02118 901 MobiDBLite consensus disorder prediction 277 297 - -
Ecan3g02118 901 Pfam C3HC zinc finger-like 89 210 IPR012935 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02118 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84830 Ecan3g02118 Ecan5g01628
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:40555109 Ecan3g02118 Ecan-Chr3:31980060 dispersed
Ecan Ecan-Chr3:31980060 Ecan5g01627 Ecan-Chr5:30018955 dispersed
Ecan Ecan-Chr3:31980060 Ecan3g02118 Ecan-Chr3:31980060 tandem