AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ecan3g02125 | ATGGAGGTTACGAATGTGACCGAGTACCAGGCAATTGCCAAGGAGAAGTTGCCAAAGATGGTCTATGACTACTATGCATCCGGTGCTGAGGACCAATGGACGCTAGAAGAGAACAGAAATGCTTTTGGAAGAATTCTGTTTAGGCCCCGTATTCTTATTGATGTGAGCAAGATTGACATGACCACAACCATTTTGGGTTTCAAAATATCTATGCCCATAATGATTGCCCCAACGGCTATGCAAAAGATGGCTCACCCTGAAGGTGAATATGCAACAGCTAGAGCTGCATCTGCAGCCGGGACTATTATGACGCTGTCATCATGGGCAACATCAAGTGTTGAGGAGGTTGCATCAACAGGACCTGGGATCCGCTTCTTCCAGCTTTATGTGTACAAGGACCGCAATGTTGTGGCTCAACTTGTGAGAAGAGCTGAACGAGCCGGGTTCAAAGCCATAGCTCTAACAGTTGACACACCGCGACTAGGACGTCGAGAAGCTGACATCAAAAACAGGTTTACTTTACCCCCATTTTTGACACTGAAGAACTTTGAGGGTCTGGACCTTGGCAAGATGGATGAAGCTAATGACTCTGGATTAGCTTCTTATGTTGCTGGTCAGATTGACCGAACTTTGAGCTGGAAGGATGTGCAATGGCTTCAAACAATCACTACAATGCCAATCCTTGTGAAGGGTGTGATCACTGCTGAGGATACAAGGTTAGCTATTCAAGCTGGAGCTGCGGGAATTATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATCATGGCTTTAGAGGAGGTTGTGAAAGCTGCACAAGGACGTGTACCTGTATTCTTGGACGGTGGTGTACGACGTGGTACAGATGTTTTCAAGGCCTTGGCACTTGGAGCTTCTGGCATATTTATTGGGCGACCTGTGGTCTTTTCATTGGCTGCTGAAGGAGAAGCTGGAGTAAAGAAAGTGCTTCAAATGTTACGTGATGAGTTTGAGCTAACCATGGCATTAAGTGGTTGTACCTCACTCAAACAGATTACCCGAAACCACATTGTAACCGAGTGGGATGCTCCACGGACTCGTCCTGCACCTAGGTTATAG | 1110 | 46.58 | MEVTNVTEYQAIAKEKLPKMVYDYYASGAEDQWTLEENRNAFGRILFRPRILIDVSKIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITTMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCTSLKQITRNHIVTEWDAPRTRPAPRL | 369 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ecan3g02125 | 369 | FunFam | peroxisomal (S)-2-hydroxy-acid oxidase GLO1 | 1 | 366 | - | - | |
| Ecan3g02125 | 369 | SUPERFAMILY | FMN-linked oxidoreductases | 2 | 356 | - | - | |
| Ecan3g02125 | 369 | PIRSF | Al-hdrx-acd-dh | 1 | 359 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Ecan3g02125 | 369 | ProSiteProfiles | FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. | 1 | 359 | IPR037396 | - | |
| Ecan3g02125 | 369 | CDD | alpha-hydroxyacid-oxid-FMN | 8 | 351 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Ecan3g02125 | 369 | ProSitePatterns | FMN-dependent alpha-hydroxy acid dehydrogenases active site. | 252 | 258 | IPR008259 | GO:0016491(InterPro) | |
| Ecan3g02125 | 369 | PANTHER | S -2-HYDROXY-ACID OXIDASE-RELATED | 2 | 353 | - | GO:0005777(PANTHER)|GO:0008891(PANTHER) | |
| Ecan3g02125 | 369 | Pfam | FMN-dependent dehydrogenase | 13 | 355 | IPR000262 | GO:0016491(InterPro) | |
| Ecan3g02125 | 369 | Gene3D | Aldolase class I | 1 | 369 | IPR013785 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ecan3g02125 | K11517 | (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] | ||||
| Ecan3g02125 | K00101 | L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 84833 | Ecan3g02125 | Ecan4g02588 | |
| 84834 | Ecan3g02125 | Ecan4g02590 | |
| 84835 | Ecan3g02125 | Ecan5g01631 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ecan | Ecan-Chr3:32041960 | Ecan4g02588 | Ecan-Chr4:35774371 | dispersed | |
| Ecan | Ecan-Chr4:27434424 | Ecan3g02125 | Ecan-Chr3:32041960 | transposed | |
| Ecan | Ecan-Chr3:32041960 | Ecan4g02587 | Ecan-Chr4:35774371 | wgd | |
| Ecan | Ecan-Chr3:32041960 | Ecan5g01631 | Ecan-Chr5:30055935 | wgd |