AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02130 ATGACTTCTTCTACTACTTCTATTTCTACTCAAAATTGGGCTAATACACAAACCAAATTTTTACCTTCTTCTACACAAGATGTTTTTGGTTCATTTTCAACATCTTCTATTTCTTTTAACCAAAAACCAAATTCTAGAATTGCTTGTGCACTTCAAACACCTTCAATTCTTCAAATTCCAAAACAAACACCTAAGAAAAACTCAATAGAATTACCATCTTTCACTTCGTTGCCACATGTCCCAAAAAATTGGAACTTTTTACAAAAATTTGCAGCAATGGCATTGGATGCTATTGAAGATGGCATTAAAGAAAAAGAAAGATTACAGCCTTTACCGAAAACAGCCGACCCAGAAGTTCAGATCGCCGGAAATTTTGCTCCGGTGCCGGAACAGCCCGTAAGAAAATCTTTGCCAGTCACCGGAAAAATCCCGGAACATATACAAGGTGTTTATTTACGAAACGGTGCGAACCCATTATTCGAGCCGACTTCGGGCCATCATTTGTTTGATGGTGACGGCATGATTTATGCCGTGAAGTTGGAAAATGGGTCGGCAAGTTATGCTTGCCGGTTTACTGAAACCCAACGGCTGGTTCAAGAACGAGCCATTGGGAAACCGGTTTTCCCCAAAGCAATTGGGGAATTACATGGGCATTCCGGGATAGCGAAATTGTTATTGTTTTATGCACGTGGGTTGTGCGGGATCATTGATCATACTAAAGGCATTGGGGTCGCCAACGCCGGTTTGGTTTATTTTAATAACCGGTTGTTGGCGATGTCGGAAGATGATTTGCCTTATCATGTTCGTGTTACACCCTCCGGCGATTTAAAAACCGCTGGAAGGTATAACTTTAATGGTCAACTTGAGTCAACTATGATTGCTCACCCGAAACTGGACCCAGTTTCGGGTGAGCTGTTTGCACTCAGCTATGATGTTATTCAAAAACCATACTTGAAGTACTTTCGATTTTCACCTGATGGTAAGAAATCAAAAGATGTTGCTATTGATTTGGGAAAGCCTACTATGGTACATGATTTTGCAATCACGGAGAATTTTGTAGTTGTGCCAGATCATCAGGTTGTTTTCAAGATGTCCGAAATGATCACGGGCGGGTCGCCCGTGGTGTACGATAAAGAGAAAGTGTCGCGGTTTGGTGTACTTAATAAATATGCGGAAGATGGGTCGGGTATTAAATGGGTTGAAGTTCCGGATTGTTTTTGTTTTCATTTATGGAATGCGTGGGAAGAACCCGAAAACGACGAGGTTGTCGTGATCGGGTCCTGCATGACTCCCGCGGATTCCATTTTTAATGAATGCAACGAGGAGTTAAAATCTGTTTTGTCCGAAATTCGTTTGAATTTAAAAACAGGGAAATCGACACGTAAGGCAATAATTGCGCCTGAAAACGACGTTAACTTGGAAGCGGGAATGGTGAACAAAAACCTTTTGGGCCGTAAATCGCAATTTGCATATCTTGCAATAGCCGAGCCTTGGCCAAAGGTGTCTGGTTTCGCCAAAGTTGATCTTTCAACTGGCGAAACCAAAAAGTTTATTTATGGGGAAGAAAAATATGGCGGGGAACCACTTTTTCTTCCTCGAGACTCCAACTCTGACAGAGAGGACGATGGCCACATTTTGGCCTACGTCCACGACGAAAAAACATGGGAATCAGAACTCCAAATCGTGAATGCAATGACAATGGAACTAGAAGCGACGGTCAAGTTACCATCCCGTGTTCCATACGGCTTTCACGGCACGTTTATTAGTGCGAAGGATTTGGCAACTCAGGCTTAG 1794 42.42 MTSSTTSISTQNWANTQTKFLPSSTQDVFGSFSTSSISFNQKPNSRIACALQTPSILQIPKQTPKKNSIELPSFTSLPHVPKNWNFLQKFAAMALDAIEDGIKEKERLQPLPKTADPEVQIAGNFAPVPEQPVRKSLPVTGKIPEHIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKLENGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGIIDHTKGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFNGQLESTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSPDGKKSKDVAIDLGKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLNKYAEDGSGIKWVEVPDCFCFHLWNAWEEPENDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRKAIIAPENDVNLEAGMVNKNLLGRKSQFAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGEEKYGGEPLFLPRDSNSDREDDGHILAYVHDEKTWESELQIVNAMTMELEATVKLPSRVPYGFHGTFISAKDLATQA 597
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02130 597 PANTHER BETA-CAROTENE DIOXYGENASE 110 588 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
Ecan3g02130 597 Pfam Retinal pigment epithelial membrane protein 125 589 IPR004294 GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02130 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84836 Ecan3g02130 Ecan4g01049
84837 Ecan3g02130 Ecan4g02586
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32092740 Ecan8g00148 Ecan-Chr8:1785572 dispersed
Ecan Ecan-Chr3:44592343 Ecan3g02130 Ecan-Chr3:32092740 transposed
Ecan Ecan-Chr3:32092740 Ecan4g02586 Ecan-Chr4:35748072 wgd