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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02136 ATGGCGATCATAGAAATGCGAGTACATATAGATTGTCCAGGATGTGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGAGTGGAGAACGTAGAAATAGACACGGGGTTACAAAAGGTAACGGTCACAGGAATCGCGGACCAGAAGAAGGTGTTGAAGACGGTAAGGAAGACAAGCCGGCAAGCTGAAATATGGAACGTACCCTATAATCCAGAAATCCGAAGCCATAACTACAATGTTAATCAATATGCACCACAACAACAACAAAATGGTGGTTCCGTCCCAGGCCCATCTGGGACGTTTTACACCCGCCAGCCAGCTTCAGCGTCATCATACAACTACTACAAGCATGGTTACGATAATCAACAGGGCTATAACCCGGTACAATCATCTGGATTAATTGGACACCAAACTGGTGCTGCCTTTAGCGATGACAATACCAATGCTGCCTGTAACATCATGTAG 468 45.09 MAIIEMRVHIDCPGCENKIRKALQRLKGVENVEIDTGLQKVTVTGIADQKKVLKTVRKTSRQAEIWNVPYNPEIRSHNYNVNQYAPQQQQNGGSVPGPSGTFYTRQPASASSYNYYKHGYDNQQGYNPVQSSGLIGHQTGAAFSDDNTNAACNIM 155
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02136 155 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 155 IPR045181 GO:0046872(InterPro)
Ecan3g02136 155 SUPERFAMILY HMA, heavy metal-associated domain 3 67 IPR036163 GO:0046872(InterPro)
Ecan3g02136 155 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Ecan3g02136 155 Gene3D - 2 65 - -
Ecan3g02136 155 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
Ecan3g02136 155 Pfam Heavy-metal-associated domain 7 60 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02136 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32204739 Ecan4g01019 Ecan-Chr4:21388501 dispersed
Ecan Ecan-Chr3:32204739 Ecan2g01810 Ecan-Chr2:28662415 transposed