AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02139 ATGTCTTCTTCACTACTTCATCCACTTACCTCTCCATTTACTACTTCTCCTTCCAAACCAAACACTTTCAAGGCTCGAACCAATGGGTTCAGAGTCTCATGCAACGTAAAACCAACAAATGATGATAACAATGAAACCCAAAAACTCATCCTGCCGGCCTACAATATTGTAGACCGAAGGAACCTCCTTGTTGGTCTCGGCGGTCTCTGTACCGCCGCCAACTTATCTAACTTGTCATCGGCATTAGCTGATCCCATTACAGCTCCAGATATCACATCCATATGCAAGGATGCGACGTCAAATATCAAACTTGAAGGGGCGATTAGGACAGAAAAATGTTGTCCTCCTAGCCTTGGAAAGACGATTAAACCTTTCGTCTTTCCAAAAGGAGGAGAAAAGGTGAGAATGAGATGGCCTGCTCATAAAGGAACTAAAGAGCAAGTCGAGAAATACAAACAAGCCATTGCAGCCATGCGGGCTCTTCCAGACGAACACCCGCACAGCTTTAAACAACAAGCTTCTATCCACTGTGCTTATTGTAACGGCGGTTACACTCAAGTCGATAGTGGGTTTCCCGATATAGATATCCAGATTCATAACTCGTGGCTTTTCTTTCCTTTCCATCGTTGGTACTTGTACTTTTACGAAAGAATTTTGGGTACTTTGATTAACGATCCCACTTTCGCTTTGCCGTACTGGAACTGGGACGATCCAGCTGGAATGGAGCTTCCGGAAATATTTCTTGGTGACGAAAGCAACCCTCTGTATGACGTGTACCGTGACCCTAAACATCAACCCCCACTATTAGTCGACTTAGCATTCAATGGGAGCGACAAGGATCCGGATATTGATCAAAAAGAGTGCAATCTGTTCGCAGTGTACCGTGACTTGGTTAGGAATGCGAGTGATACCAAGAGTTTCTTTGGAGGTGAGTATGTAGCTGGTGATGAGCCCATCAAGAGTGGGGATAAATCAATTGGATCTGTAGAAGCCGGTACTCACACTGCGGTCCACAGATGGGTTGGTGACTCGAACCGGCCTAATGGAGAGGACATGGGTAATTTTTATTCCGCGGGTTATGACCCCGTGTTTTATTGCCATCATGCTAATGTCGACCGAATGTGGAAGCTATGGAAGGATTTCGGCACTCCAGGACACGTGGAACCAACCAAGGACGATTGGTTAAATGCTTCGTACGTGTTCTACGACGAGAATCAAGACCTTGTTCGAGTTTATAACAAAGACTCGGTCGATACAAGGAAGCTCAAGTTCGATTATGCAAGATCTGATCTTGGTGAGCTCAAATGGAGCAAGAGTCGGCCCCCCAAACGTAACGTAAAGTCACAAGCCGCTACTATCCCACTAGGCGATGTGAAATCGTTGGACCAGGTGAAGTTCCCGGTTAAGCTAGACAAAATCATCAAGTTCCGTGTGAAGAGGCCAGCTGTGAACAGGACTGATGACCAAAAGGCGAAATCCAAAGAGCTTTTGTTGATCAACGGGATCAAATTCAGCGCTGATAAATTTGTAAAGTTTGATGTGTTTGTGAATGACAAGGTTAACGTTGGTACGGACAAATTTCCCACGCCTTGTGACCCTGAATACGCGGGTGGGTTTGCTCAGGTTCCACATAGCGAGAGGAGTAAAATGAAGATGACTAGTGCTGCGAGGTTCGGGCTGGACGAGCTGTTGGATGACACAAACACTGAAGGTGACGAGTACGCGGTGGTTGCATTGGTGCCAAGGACCGGGACCCAAGATCTCACCATTGAGGAAATTAAGATCGAGTTGGTTCCCGTTGTGTGA 1806 46.23 MSSSLLHPLTSPFTTSPSKPNTFKARTNGFRVSCNVKPTNDDNNETQKLILPAYNIVDRRNLLVGLGGLCTAANLSNLSSALADPITAPDITSICKDATSNIKLEGAIRTEKCCPPSLGKTIKPFVFPKGGEKVRMRWPAHKGTKEQVEKYKQAIAAMRALPDEHPHSFKQQASIHCAYCNGGYTQVDSGFPDIDIQIHNSWLFFPFHRWYLYFYERILGTLINDPTFALPYWNWDDPAGMELPEIFLGDESNPLYDVYRDPKHQPPLLVDLAFNGSDKDPDIDQKECNLFAVYRDLVRNASDTKSFFGGEYVAGDEPIKSGDKSIGSVEAGTHTAVHRWVGDSNRPNGEDMGNFYSAGYDPVFYCHHANVDRMWKLWKDFGTPGHVEPTKDDWLNASYVFYDENQDLVRVYNKDSVDTRKLKFDYARSDLGELKWSKSRPPKRNVKSQAATIPLGDVKSLDQVKFPVKLDKIIKFRVKRPAVNRTDDQKAKSKELLLINGIKFSADKFVKFDVFVNDKVNVGTDKFPTPCDPEYAGGFAQVPHSERSKMKMTSAARFGLDELLDDTNTEGDEYAVVALVPRTGTQDLTIEEIKIELVPVV 601
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02139 601 Pfam Common central domain of tyrosinase 167 379 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 MobiDBLite consensus disorder prediction 1 22 - -
Ecan3g02139 601 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 361 372 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 PIRSF PPO-plant 1 599 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Ecan3g02139 601 Gene3D - 84 430 IPR008922 -
Ecan3g02139 601 SUPERFAMILY Di-copper centre-containing domain 98 429 IPR008922 -
Ecan3g02139 601 PRINTS Tyrosinase copper-binding domain signature 333 344 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 PRINTS Tyrosinase copper-binding domain signature 199 216 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 PRINTS Tyrosinase copper-binding domain signature 360 378 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 PRINTS Tyrosinase copper-binding domain signature 230 235 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 Pfam Polyphenol oxidase middle domain 390 441 IPR022739 GO:0004097(InterPro)
Ecan3g02139 601 ProSitePatterns Tyrosinase CuA-binding region signature. 199 216 IPR002227 GO:0016491(InterPro)
Ecan3g02139 601 PANTHER TYROSINASE FAMILY MEMBER 58 563 IPR050316 -
Ecan3g02139 601 Pfam Protein of unknown function (DUF-B2219) 466 597 IPR022740 GO:0004097(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02139 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84842 Ecan3g02139 Ecan4g02536
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32232266 Ecan4g02583 Ecan-Chr4:35701645 dispersed
Ecan Ecan-Chr3:32226273 Ecan3g02139 Ecan-Chr3:32232266 tandem
Ecan Ecan-Chr3:32232266 Ecan3g02140 Ecan-Chr3:32236380 tandem