AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02164 ATGAGATGCAACGCGTGCTGGCGGGAGCTGGAAGGCAGAGCTATATCTACTACGTGTGGACATCTGTTGTGCAATGAAGATGCAAGTAAGATACTAAGCAATGATGCAGCTTGCCCTGTTTGTGATCAAGTTCTTTCTAAAAGTCTCATGAAACCAGTGGATATCAACCCAAACGATGAATGGATAAATATGGCTATGGCTGGCATATCTCCGCAGATACTAATGAAGAGTGCATACAGAAGCGTTATGTTCTTCATTGGACAAAAAGAACTAGAAATGCAATTCAAGATGAACAGGATAGTCGCTCAGTGCAGGCAGAAATGTGAGGCAATGCAAGAGAAGTTTACAGAAAAAATGGAGCAAGTGCATACAGCATATCAGAAAATGGCCAAAAAGTGCCAGATGATGGAACAAGAAATTGAGAATTTGTCTAAAGATAAACAAGAGCTCCAAGAAAAGTTTTCTGAGAAATCCAGGCAAAAGCGAAAGCTGGATGAGATGTATGACCAATTGAGAAGTGAGTACGAGTCGATAAAACGATCAGCTATTCAACCTGCAAACAACTTCTTCTCAAGGACAGAACCTGACTTGTTTGCCAGTCCAGCTAACATGATGGATAATAGAGATGCCATGAGGAAAGATTGGTCCGTTATCACCCCTGACACTCCAGGACCCCGGGAAGATATATGGCCACAAACAACAAGACAGAACAGTTCCAACTCTGGCCCATTTGACATCTCTGCTAGCCCACCTGCTAAACCTTCAGCAATTCCAGTTGAAACCAGAAGACCGGTTGGTCGCCCCATGTTTGGAGGTGGAGTTGGTGGTGGCGGAAGTGGAGCTAGCAATCCCTCTACAACGTTGAGAAACCTCATTTTATCACCAATGAAGCGGCCTCAGCTCTCTCGTAGCCGGCCTCAATTGTTCACGTAA 933 44.37 MRCNACWRELEGRAISTTCGHLLCNEDASKILSNDAACPVCDQVLSKSLMKPVDINPNDEWINMAMAGISPQILMKSAYRSVMFFIGQKELEMQFKMNRIVAQCRQKCEAMQEKFTEKMEQVHTAYQKMAKKCQMMEQEIENLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESIKRSAIQPANNFFSRTEPDLFASPANMMDNRDAMRKDWSVITPDTPGPREDIWPQTTRQNSSNSGPFDISASPPAKPSAIPVETRRPVGRPMFGGGVGGGGSGASNPSTTLRNLILSPMKRPQLSRSRPQLFT 310
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02164 310 Coils Coil 126 181 - -
Ecan3g02164 310 MobiDBLite consensus disorder prediction 229 246 - -
Ecan3g02164 310 FunFam E3 ubiquitin-protein ligase CCNB1IP1 homolog 1 53 - -
Ecan3g02164 310 Gene3D alix-aip1 like domains 74 212 - -
Ecan3g02164 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 310 - GO:0051026(PANTHER)
Ecan3g02164 310 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
Ecan3g02164 310 Pfam zinc-RING finger domain 2 43 IPR001841 -
Ecan3g02164 310 MobiDBLite consensus disorder prediction 279 293 - -
Ecan3g02164 310 MobiDBLite consensus disorder prediction 221 310 - -
Ecan3g02164 310 SUPERFAMILY RING-U-box 2 50 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02164 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32467314 Ecan3g02165 Ecan-Chr3:32467314 tandem