AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02171 ATGTTGGAAACTTTACTAATAGCCTCCCCTGATGGTCGAATCATAGCCTATGATCCATACACTGGAACTGTCTTAGCTCGCTTCAATGGTAGCCGATGTCCTTGTAATAGCATCGCTATTGTTGGAAACAATCAATTTGCTGTTTCTCATGTTTCGGAGCAAACTGGTGCAGGCTGTGTTAATCTGTATTACTGGTGGTCAAAGTCTTGTGCACAAAGTATTCCTATCCCTGAACCTGTAGTTCCGCTTACTGCTATGGTAGACGGGTCATATCTGTTTGCAGGCGGAGTTTCAGGTCACATACATTCATTATCGGTACCTTCAGGAGATCTTATCCATTCATTTTCAGCCCATGAGCATCCCGTGTCCTGTCTGGCAATCAGTAGTGATGGATCGTTGGTTCTCTCAGGGAGCGATGATGGAACAATCGCTGTTACTCCTATATTGTTGCTTCTAGATTCTACGTTTGATATTGAATCGAGAATTTCTGGTTTTAACAAATTTATTGGGCATGAATCATCCGTGACAGGATTAAGCACTGGCTTGGGACCGTGCAGTGGCATTATGATCTCCAGCTCATTGGACTGGACTTGCAAGGTATGGAACGTTGTGAAAGGGATTCACCTCCAAACGGTGAACTTCCCAGGGGAAATGTTGTGCACGGTGCTGGATGCATCAGAGACAGAGTTGTATGCTGCAGGAGCAGATGGAATTATATACAAAAGAAAGCTTAAAGTGGAAACAAAAAATCAACTGGCGGAAGGAAGAGAGACTATAGTATGGGGCAGGATACACAGCGGGGCAGTAGCGGCTATCGAAATGGCAAATTACGGAAGAACTCTTTTGGCTGTTTCTGAGAACGGAAGGATATGTGCTTGGGAAACAGAAAATGGCAAGATGACAAGTAGTTTTTGTAAGAAAACTGGAACCGTTAGCAGTGTTGTACTGGTGAAAGGTGGAGGTTGGTTTAGAAAAAGAGGAACTGAAAAAGGTGAATTCAATGGTTATGGCGGCACGCAGGAAGTGGGTAAGATGGTGAAGCAGGTTGCGGAAATGGGAGAGACTTTGAAAGTGGTGGCAGAAGACAGGGGAAGGGAGATTAGTAACCTTGAATCAGCGATCGAGGTTAATGAAAAGCTGCTTAACCTCATGCTAAAGGAAGCCAAGGCGATTGCCAAATTTGAGGACTCCAAACTGACCTTGAAACTTAAAAAATGA 1218 44.17 MLETLLIASPDGRIIAYDPYTGTVLARFNGSRCPCNSIAIVGNNQFAVSHVSEQTGAGCVNLYYWWSKSCAQSIPIPEPVVPLTAMVDGSYLFAGGVSGHIHSLSVPSGDLIHSFSAHEHPVSCLAISSDGSLVLSGSDDGTIAVTPILLLLDSTFDIESRISGFNKFIGHESSVTGLSTGLGPCSGIMISSSLDWTCKVWNVVKGIHLQTVNFPGEMLCTVLDASETELYAAGADGIIYKRKLKVETKNQLAEGRETIVWGRIHSGAVAAIEMANYGRTLLAVSENGRICAWETENGKMTSSFCKKTGTVSSVVLVKGGGWFRKRGTEKGEFNGYGGTQEVGKMVKQVAEMGETLKVVAEDRGREISNLESAIEVNEKLLNLMLKEAKAIAKFEDSKLTLKLKK 405
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02171 405 Pfam WD domain, G-beta repeat 110 144 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 Pfam WD domain, G-beta repeat 167 202 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 145 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 PANTHER WD-REPEAT PROTEIN 18 3 329 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Ecan3g02171 405 SMART WD40-4 254 294 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 SMART WD40-4 108 147 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 SMART WD40-4 161 202 IPR001680 GO:0005515(InterPro)
Ecan3g02171 405 SUPERFAMILY WD40 repeat-like 5 322 IPR036322 GO:0005515(InterPro)
Ecan3g02171 405 ProSitePatterns Trp-Asp (WD) repeats signature. 189 203 IPR019775 -
Ecan3g02171 405 Gene3D - 3 150 IPR015943 GO:0005515(InterPro)
Ecan3g02171 405 Gene3D - 151 323 IPR015943 GO:0005515(InterPro)
Ecan3g02171 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 115 145 - -
Ecan3g02171 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02171 K14829 pre-rRNA-processing protein IPI3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32516902 Ecan8g01380 Ecan-Chr8:26052808 dispersed