AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02187 ATGAATGCTTCCCATTTTTATTTAATTTTTTCAACAGTTATTTTCATTTACATCTTTCAGTTGGAAGCTCAAGCTGCCCCTGCTGCTGCTGGCCCAGTAATTAAACAACTATCTTCCATTTTCAAGTGGACAGCTAGGTCATCATCATCTTCTAAATCATCATTATCAGATGGGAATATTCTTCAATTTGAGGATGGTTATTTAGTAGAAACAGTAGTTGAAGGGAATCAGTTAGGGGTTGTGCCGTATTCGGTTCAGGTTTCGCAAGAAGGTGAACTATATGCTGTTGATACAGTCAATAGCAACATTGTTCGGATTACGCCCCCTTTGTCACAATATAGTAGGGCAAGGTTGATTGCGGGGTCGTTTCAAGGTTATACTGGACATGTAGATGGGAAACCGAATGATGCTCGTTTTGATCATCCTAAAGGTGTTACTATGGATGATAAAGGAAATGTGTATGTTGCCGATACTTCTAATCTTGCCATTAGAAAGATCGGTGAAACAGGTGTGACGACAATAGCTGGTGGAAAATCAAATGTAGCAGGATACAGGGACGGGCCAAGTGAAGATGCACAGTTTTCAAGTGACTTTGATGTAATTTATGTGAGACCAACCTGCTCGTTGCTAGTTATTGATCGAGGAAATGCAGCTCTTCGACAAATTTCTTTGAATCAAGAGGATTGTGATTACCAAGATAGCTCTATAACTTCCACAGATCTTGTTTTGTGTATTGGTGCCATCTTGATAGGATATGCTGTATGCATCGTTCAACAAGGATATGGCTCATCGTATTTCTCTGCAGTGCATAAGGCGGAGAGTGATACTAAAAGACCAAGCAAGGAAAAACCCACTAAAACTCAAAATGTGGAAACCATTAGAGAAGAACAAGAAGCAGGATGGCCATCTTTTGGGCAACTAGTTACGGATCTATCAAAGCTCGCCCTCGAAGGCTTTGGTAACATCTTTGTTCCATGGAACCCGTTCAACAGTCCTGGGAGAGGCCTCACCCCTTTAAAAGATCATCTTATAATGCCTGAAGATGAACTTGCTCAGCAGCCGCCATTGGTACAGAAGCACAGAACGCCAACCCCTCTTTCAGAAACCCGTCATGCCCACAATCCAAATGAAAAAATTGCAGAAACAAAGCCTGCTAAACTCAGATCATCTAGCATAAAAGATCCAAGCAAGCATAGAGTCTCTAAAAGAGAAGAATATGCCGAGTTTTATGGTGGGGCTAGTGGTGAGGTTCCTCATGTTCGATCCAAGAGCCAGAAGGAAAGAACAAAGCATCGGTCTAGAGATAAACGAGCTGAAGCTGCGTATGGAGGTGAGCAAAAGACTGTTGACCCAAAACCGGTCAACTATGATGATCCCAAGTTTAGTTATATGAGAAACAAGTTTGGTGAATCATATCGTTACAATTAA 1428 41.46 MNASHFYLIFSTVIFIYIFQLEAQAAPAAAGPVIKQLSSIFKWTARSSSSSKSSLSDGNILQFEDGYLVETVVEGNQLGVVPYSVQVSQEGELYAVDTVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKPNDARFDHPKGVTMDDKGNVYVADTSNLAIRKIGETGVTTIAGGKSNVAGYRDGPSEDAQFSSDFDVIYVRPTCSLLVIDRGNAALRQISLNQEDCDYQDSSITSTDLVLCIGAILIGYAVCIVQQGYGSSYFSAVHKAESDTKRPSKEKPTKTQNVETIREEQEAGWPSFGQLVTDLSKLALEGFGNIFVPWNPFNSPGRGLTPLKDHLIMPEDELAQQPPLVQKHRTPTPLSETRHAHNPNEKIAETKPAKLRSSSIKDPSKHRVSKREEYAEFYGGASGEVPHVRSKSQKERTKHRSRDKRAEAAYGGEQKTVDPKPVNYDDPKFSYMRNKFGESYRYN 475
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02187 475 PANTHER - 21 472 - -
Ecan3g02187 475 MobiDBLite consensus disorder prediction 350 459 - -
Ecan3g02187 475 Pfam NHL repeat 139 165 IPR001258 GO:0005515(InterPro)
Ecan3g02187 475 MobiDBLite consensus disorder prediction 364 406 - -
Ecan3g02187 475 Gene3D - 16 224 IPR011042 -
Ecan3g02187 475 SUPERFAMILY NHL repeat 75 222 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02187 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:6085244 Ecan3g02187 Ecan-Chr3:32639279 dispersed
Ecan Ecan-Chr3:32639279 Ecan1g00069 Ecan-Chr1:719840 transposed