AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02203 ATGAAGGGACATTCCATCAAGTCCTTAAAAATGTTGTCGAGCTACACTCTTGAAAATTTGGACGATGATAGTTTGGAGGGTTCAGTGGATGAGTGTCACATCTTTAGAGAGGTGTTCTTTGGGCGTGAAAGTGCTCAAATCAGTAAAAGTTGTCTTGTGACTGGTTCAGTAAGTTTTGAATATGACAGAAAGATCCCTAAAGACATCTCGTTTTGTTCAGACAGTGACATTTCAGTTATGACTATTCAGGAAGACTTTCAGAATACAAAGGAAAATTTTGGACAGGGTGGCATCTGTGAGGAGTTTGCTTTGTTGACTGGAAATACCCCTGATGTTGAAGTGAAGATAATGAAGGTGGCACCTGAAGGACATTCCATTACTAAACCTTATCTAGAAAAGGCAGTCGAGTCTTCCAGAAGATGGGATGATGCCTATTTTACTGAAATTGACGTGGATGAGTTGTTTACCCCCCCTGAAGATATCACCTCAAATCCTAGACCTCTTTTACGTTATCATACATTTTGCGTACTCAGAGCAGCAGGATGGATTGTTGGTAAGCGTAAGAGAAAAGATAACTTTAAATGGGGTGTAGAGTATATGTTCAAAACTCCTGAAGGAAAGCTAGTTCGGGAATTTTATAAAGCTTGGAACATGTGCGGGCAAAGATTAATTAGTAATGCAAACTTTATTGGTGTATGTAATGGCAAATGGTGGACTGGTTTGACTCAGTTCTGGTCTGATTTTTCTAATGCATTGATCAAGGTTGAAGAACTGAGAACTTCGGGAGATGTGATTGCCTTAGCTCATTGGTGGTCCTTGCTTGATCCCTTTGCAAAAGTGGTTTTAATAGAAAAAAGTTTGTCCAATCTGAAATTAGGAAAAAAAGTCAAAGTAGAGAGAACGGTGGTCAACCATTCTGCAAGCTCTAAGAAATCAGACAGATGTGAAAAGTCAATTGAATATAAAAAGAGGAATGAAGGGAAGCGTCGTATCAAATATGATGAACTGTTACGGTCAGGTATATATAGTAATCAATCAACTAAAAAAAGTAAGACTCGTGTTCCAAAAGGTGCCAAGACGTACAAGAGCAAAAAAGGCAGTTGCAGGTTGCTTCCACGCTGTTCTGGAAAGTTGTCTGGGCTTGCTGTAAGAACGGTACTGTGTTGGTTGATAGATCTTGGAGTTATTCGGATCAATGAAGCGATCCAGTATAGGGACCCACAGGATGGTTCAGCGGTGAAGAATGGTGTTGTAACCCGAAATGGTATTTTGTGCAAATGTTGTAAGAAGGTGCTCTCTGTCTCTGAGTTCAAGAATCATGCTGGTTATAACATGAAACGTCCTTGTTTGAATCTTTTTATGGAATATGGAAAACCATTTACTTTATGCCAACTGGAAGGCTGGTCAACTGAATACAAACTTAGGAAAAGTGCCACTCGAGCTATACATGTGGAGGGAATTGACGAATATGATGATAGTTGTGGCCTTTGTGGTGATGGAGGTGAGCTGATATGTTGTGATAACTGTCCCTCAACATTTCATCAAGTATGTTTGTCTACGCAGGAGCTACCTGAAGGCAGTTGGAATTGTTCAATGTGCTGTTGCAGGAGATGCGGGGATGTAGTCGTTCGTACTGAGGCTTCAGTCTCTAATGCTCTGAAATGTTTGCAGTGCGAGCACAAGTATCATAAGGATTGCGCCAAAGAGAACGGGATTAAGAGAGAGTTTGTGGGTCCTACCTGGTTCTGTGGAGAAACCTGTGAGAAGATCCATACAGGTCTTCACTCCCTGATTGGATATGTGAATCCAATCTCTGAGGGTTTTTCGTGGAGCCTTCTGAGGTGTATTCATAGTGACCAAAAGGTTCACCCTGGTGAGAATTTGGCTGCCCTGAAGGCAGAATGCAATCTAAAACTAGCTGTGGCTCTAACAATCATGGAGGAATGCTTTCTTCCTATGGTGGATACGCGGACTGGCATCCATATGATACCCCATGTAGTGTACAATTGGGGATCAGAATTTGCCCGTCTCAACTATGAGGGTTTCTACACGTTGGTCCTGGAGAAAGATGACATTTTACTCTGTGTAGCTTCCTTAAGGATTCATGGTGCAAGAGTTGCAGAGTTGCCCCTCATTGCAACATGCAGCAGATATAGGCGCCAAGGAATGTGTAGGCGTCTCATGAATGCTATTGAAGAGATGCTGAAGTATTTCAAAGTGGAGATGCTAGTGGTATCTGCCATTCCTGACTTAGTTGAGACATGGACAGAGGGATTTGGTTTCTCACCCTTGGAAGCTGATGAAAAGAAAAGCCTGGACAGAAACAACTTCATGGTGTTCCCAGGAACGGTATGGCTTAAGAAGCCCATGTATCAGGGGTCAACCTTTATCAATAATTGTCATGGTGCAGTATTAAAAGCTGATTCTTCAGATCCGAATCGTGATCTTCAAGAAGTTAGGCATTCGGTAGATATGGTGCCAGTTGACAGCAATAAATTTTTGCAAGATCATAGATTTTGTGATGATAAGTTGGTAGAAGTAGATATAAAGCTTGAGGTTGAAGAATCGATCTACAAGATAGTAGGGGAAGCTCAGCTGGATCAGTTTGTGATGTAA 2616 41.59 MKGHSIKSLKMLSSYTLENLDDDSLEGSVDECHIFREVFFGRESAQISKSCLVTGSVSFEYDRKIPKDISFCSDSDISVMTIQEDFQNTKENFGQGGICEEFALLTGNTPDVEVKIMKVAPEGHSITKPYLEKAVESSRRWDDAYFTEIDVDELFTPPEDITSNPRPLLRYHTFCVLRAAGWIVGKRKRKDNFKWGVEYMFKTPEGKLVREFYKAWNMCGQRLISNANFIGVCNGKWWTGLTQFWSDFSNALIKVEELRTSGDVIALAHWWSLLDPFAKVVLIEKSLSNLKLGKKVKVERTVVNHSASSKKSDRCEKSIEYKKRNEGKRRIKYDELLRSGIYSNQSTKKSKTRVPKGAKTYKSKKGSCRLLPRCSGKLSGLAVRTVLCWLIDLGVIRINEAIQYRDPQDGSAVKNGVVTRNGILCKCCKKVLSVSEFKNHAGYNMKRPCLNLFMEYGKPFTLCQLEGWSTEYKLRKSATRAIHVEGIDEYDDSCGLCGDGGELICCDNCPSTFHQVCLSTQELPEGSWNCSMCCCRRCGDVVVRTEASVSNALKCLQCEHKYHKDCAKENGIKREFVGPTWFCGETCEKIHTGLHSLIGYVNPISEGFSWSLLRCIHSDQKVHPGENLAALKAECNLKLAVALTIMEECFLPMVDTRTGIHMIPHVVYNWGSEFARLNYEGFYTLVLEKDDILLCVASLRIHGARVAELPLIATCSRYRRQGMCRRLMNAIEEMLKYFKVEMLVVSAIPDLVETWTEGFGFSPLEADEKKSLDRNNFMVFPGTVWLKKPMYQGSTFINNCHGAVLKADSSDPNRDLQEVRHSVDMVPVDSNKFLQDHRFCDDKLVEVDIKLEVEESIYKIVGEAQLDQFVM 871
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02203 871 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 480 554 IPR013083 -
Ecan3g02203 871 Pfam Tify domain binding domain 416 464 IPR032308 -
Ecan3g02203 871 SUPERFAMILY FYVE-PHD zinc finger 472 534 IPR011011 -
Ecan3g02203 871 SMART PHD-3 493 534 IPR001965 -
Ecan3g02203 871 SMART PHD-3 535 588 IPR001965 -
Ecan3g02203 871 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 675 764 IPR016181 -
Ecan3g02203 871 Gene3D - 663 774 - -
Ecan3g02203 871 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 641 791 IPR000182 GO:0016747(InterPro)
Ecan3g02203 871 ProSiteProfiles Zinc finger PHD-type profile. 491 536 IPR019787 -
Ecan3g02203 871 CDD NAT-SF 685 746 - -
Ecan3g02203 871 PANTHER PHD FINGER FAMILY PROTEIN 379 801 - -
Ecan3g02203 871 Pfam PHD-finger 494 533 IPR019787 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02203 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84867 Ecan3g02203 Ecan4g02745
84868 Ecan3g02203 Ecan5g01697
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:32851733 Ecan5g01697 Ecan-Chr5:30745179 dispersed
Ecan Ecan-Chr3:32851733 Ecan4g02745 Ecan-Chr4:37027255 wgd
Ecan Ecan-Chr3:32851733 Ecan5g01696 Ecan-Chr5:30745179 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g02533 ACH 29 160 PHD Transcription Factor family AT5G58610 27.82 8.37e-09 57.0
Ecan8g00870 . 39 264 PHD Transcription Factor family AT5G57380 23.413 1.29e-08 56.6
Ecan8g00565 ACH 685 760 PHD Transcription Factor family AT4G14920 33.333 4.34e-07 53.1
Ecan9g02622 . 171 255 PHD Transcription Factor family AT3G53680 36.471 5.96e-08 50.4
Ecan9g00205 . 345 975 PHD Transcription Factor family AT5G58610 31.186 2.64e-84 283.0
Ecan9g00206 . 569 973 PHD Transcription Factor family AT5G58610 35.87 1.31e-74 261.0
Ecan9g00487 ACH 10 416 PHD Transcription Factor family AT5G58610 32.019 1.26e-55 199.0
Ecan9g01169 . 130 272 PHD Transcription Factor family AT5G57380 27.778 1.76e-07 52.4
Ecan9g02767 ACH 111 973 PHD Transcription Factor family AT2G36720 40.712 0.0 629.0
Ecan9g00488 . 663 1064 PHD Transcription Factor family AT5G58610 40.835 8.62e-99 317.0
Ecan1g02396 . 15 672 PHD Transcription Factor family AT5G22260 50.222 0.0 641.0
Ecan1g04294 . 1542 1706 PHD Transcription Factor family AT5G35210 86.061 8.68e-87 293.0
Ecan1g04540 . 225 973 PHD Transcription Factor family AT2G36720 45.144 0.0 660.0
Ecan2g02765 ACH 649 719 PHD Transcription Factor family AT5G36670 37.333 6.82e-07 52.4
Ecan2g01271 . 1 504 PHD Transcription Factor family AT2G18880 36.245 7.25e-88 279.0
Ecan2g03172 . 668 751 PHD Transcription Factor family AT5G58610 35.227 4.71e-08 54.7
Ecan1g01428 . 318 409 PHD Transcription Factor family AT5G22260 40.206 8.09e-09 57.4
Ecan2g01279 . 731 973 PHD Transcription Factor family AT5G58610 41.132 3.18e-52 181.0
Ecan2g01582 . 521 973 PHD Transcription Factor family AT5G58610 36.57 1.87e-77 265.0
Ecan2g01581 . 521 973 PHD Transcription Factor family AT5G58610 36.57 1.87e-77 265.0
Ecan3g03149 . 27 160 PHD Transcription Factor family AT5G58610 23.49 9.21e-07 51.2
Ecan3g03151 . 27 160 PHD Transcription Factor family AT5G58610 23.49 9.35e-07 51.2
Ecan3g03150 . 27 160 PHD Transcription Factor family AT5G58610 23.49 9.74e-07 50.8
Ecan3g00031 ACH 721 801 PHD Transcription Factor family AT3G14980 30.392 2.27e-06 50.1
Ecan3g01228 . 318 984 PHD Transcription Factor family AT4G14920 48.737 0.0 651.0
Ecan3g01227 . 318 984 PHD Transcription Factor family AT4G14920 48.737 0.0 651.0
Ecan3g00968 . 611 973 PHD Transcription Factor family AT5G58610 39.609 2.56e-75 256.0
Ecan1g02436 . 17 406 PHD Transcription Factor family AT5G22260 30.0 1.35e-52 194.0
Ecan3g02987 ACH 311 966 PHD Transcription Factor family AT1G05380 43.304 1.52e-176 549.0
Ecan3g00533 ACH 3 339 PHD Transcription Factor family AT4G30200 50.294 3.15e-92 293.0
Ecan3g02203 ACH 510 1056 PHD Transcription Factor family AT3G14980 51.171 0.0 563.0
Ecan3g00381 . 26 976 PHD Transcription Factor family AT5G58610 35.608 0.0 597.0
Ecan3g00382 ACH 26 1045 PHD Transcription Factor family AT5G58610 34.739 0.0 598.0
Ecan3g00383 . 26 1028 PHD Transcription Factor family AT5G58610 34.705 0.0 598.0
Ecan4g00332 . 352 987 PHD Transcription Factor family AT4G14920 52.648 0.0 702.0
Ecan4g02745 ACH 7 1025 PHD Transcription Factor family AT3G14980 41.604 0.0 736.0
Ecan4g01499 . 130 247 PHD Transcription Factor family AT5G57380 25.373 2.01e-10 63.2
Ecan4g02879 . 46 597 PHD Transcription Factor family AT3G24440 48.187 6.20e-171 497.0
Ecan4g02880 . 46 597 PHD Transcription Factor family AT3G24440 48.187 6.20e-171 497.0
Ecan4g01744 . 130 264 PHD Transcription Factor family AT5G57380 26.623 1.72e-10 62.4
Ecan4g00244 . 15 661 PHD Transcription Factor family AT5G22260 33.234 7.83e-110 343.0
Ecan5g00781 . 354 996 PHD Transcription Factor family AT4G14920 52.896 0.0 698.0
Ecan5g01255 . 1546 1704 PHD Transcription Factor family AT5G35210 28.902 2.16e-12 68.6
Ecan5g00762 . 145 261 PHD Transcription Factor family AT5G57380 33.077 4.39e-09 57.0
Ecan5g01934 ACH 27 160 PHD Transcription Factor family AT5G58610 29.927 8.02e-09 56.6
Ecan5g01697 ACH 566 1033 PHD Transcription Factor family AT3G14980 55.672 0.0 555.0
Ecan5g01696 ACH 566 1027 PHD Transcription Factor family AT3G14980 55.957 0.0 555.0
Ecan5g00539 ACH 1 685 PHD Transcription Factor family AT4G30200 45.989 5.73e-176 515.0
Ecan1g03533 . 615 661 PHD Transcription Factor family AT5G22260 44.681 7.94e-07 51.2
Ecan5g03133 . 81 662 PHD Transcription Factor family AT5G22260 32.02 2.09e-85 281.0
Ecan6g00707 . 172 301 PHD Transcription Factor family AT3G53680 55.385 4.00e-40 150.0
Ecan1g00362 . 189 1595 PHD Transcription Factor family AT5G12400 38.397 0.0 901.0
Ecan6g02676 . 40 831 PHD Transcription Factor family AT3G53680 49.94 0.0 816.0
Ecan1g00619 . 685 760 PHD Transcription Factor family AT4G14920 35.802 1.38e-07 54.7
Ecan6g01633 . 27 169 PHD Transcription Factor family AT5G58610 23.776 3.08e-07 47.0
Ecan7g01989 ACH 684 1027 PHD Transcription Factor family AT5G58610 44.118 1.02e-87 299.0
Ecan7g02447 ACH 312 957 PHD Transcription Factor family AT1G05380 43.053 2.55e-165 531.0
Ecan1g04155 ACH 515 973 PHD Transcription Factor family AT2G36720 38.661 3.11e-106 335.0
Ecan1g04156 . 691 973 PHD Transcription Factor family AT2G36720 42.857 4.91e-77 256.0
Ecan1g01593 . 1545 1704 PHD Transcription Factor family AT5G35210 36.25 1.96e-22 100.0
Ecan8g03182 . 679 760 PHD Transcription Factor family AT4G14920 33.333 8.01e-07 52.0
Ecan1g03361 . 27 160 PHD Transcription Factor family AT5G58610 29.197 1.63e-09 57.0
Ecan8g02521 ACH 719 807 PHD Transcription Factor family AT3G14980 30.357 3.13e-07 53.5