AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02208 ATGTTATCAATATCCCAACACCCATTAATCACCCTTTCTAAATTAAAAACCCAAGATTTCAAATTCTTATTATCAAAACCCCGTCTTCATAATCATCAAAAATATCCCAACAAGATTACGTACAACACTTATGGCTATAGAGACAGATACAGATATAATTCTTGTTTTTGTTCAAAGCTGGATATGGTTTCTTTTAGTTCAAGTGAAGAAGAATTCGATATGGAATTGGGCCGATTATTGCGATTATTACCGGAGGAAATGCGGCGAAAGGTTACCGAACATGAAGAGCTTCATCAATTGATTGAAGTTGTTATGGATTTGGGTCGAAAACCATTGGCTCGGTTTCCGTCTGGTGATTTCGTGTTATCGGATCATTTGATCACTGTGGATGATCTTGAACATGCTACTTCTTTGGTAGGTGATTTTGCTATTGATAATCGAGCTGGGATTAGTAGAACTTTGCATCGAATTAGTGCTATTAGAAACCGCAAAGGTGCTGTTATTGGGCTAACATGTCGTGTTGGCCGAGCTGTCTCTGGAAGTGCTAAGTTATTGCAGGATTTGGTTAAAGATGGATCTTCATTATTGCTAATTGGACCTCCAGGAGTTGGGAAAACTACCATTATCAGGGACATAGCTCGAATGCTTGCAAATGAATATAACAAACGTGTCATGATTGTTGACACCTCAAATGAAATTGGCGGAGATGGTGATATACCTCATGCAGGTATAGGTAATGCTCGTCGGATGCAAGTTCCTGATTCTGACATGCAACATAAGGTATTGATAGAAGCAGTTGAAAATCATATGCCTCAAGTCATTGTAATAGATGAAATTGGCACAAAACTTGAAGCAGCAGCTGCAAGCACTATTGCACAACGTGGGATTCAGTTAGTTGCCACTGCTCATGGTATTACAATAGAGAATTTGGTGCAGAATCCTTCATTGGAGATGCTTGTTGGAGGAATACAGAGTGTGACACTTGGAGATGAAGAAGCAAATCGAAGAGGTGTACAGAAATCAGTGCTGGAGAGAAAAGGTCCTTCTACCTTTGATTGTGCTGTGGAGATCATTTCTAGGCTCGAGTTGAGAGTTCATAGTAGTCTTGAAGCAACAGTTGATGCCATTCTTTCTGGTCGTTCCCCAAGATATCAAATTTGCAAGTTAAATGAGGGAGTGATAGATGATCCCTTACAAAGTGATTCAATTGCATATGATTCATTTGTCAAGAAGAGTGTGGATACGATCGAAGGCACAACATGGAACAATGAAAAGCTTACACCTGACAGAAAAATCTCAAAGGAATCTCAAAGTGAGATAGAGAATTCTTATGATAAACCACCGCTGTGTTTATTTCTCTATGGGGTTTCAGAGACAAGTGCAAGACATGTATTCAACCACTTAAAGATGGACTCTGCTGTTGAATATACAGAGAATATTAGCGAAGCAGATGCAATACTTGCACTACTGTCCAAAATAAAGAAAAATTCTCGGATTCAGGCTGCTGCTCACTCTAATGACATACCTATATATGTCACAAAAACAAGCTCGATGACTCAGTTGACAAAGGCCATAGAGGCATTATTGACGGATTATGATAATGATTTTGAAGATATCGAAGATGAATATTCTCAGATAAATGAATCAGAGAAGGCTGATGCTTTGGAGGAAGCCAGGATTGCCATTGAACAGGTTGTTATCCCGAAAGGAGAACCTGTAGAATTACTTCCAAGGCCATCCAATGTTATGCTTCTTCAGAAGGAACTAATTCGTAAATATAAGCTACAAGCACAAAAAGTTGGTTCCGAGGCGGATGTAAGGCTTCGTATCCTACCATTTCAAGGTCTTACAGAAGAAAAAGATCACGATGATGATGTCGATGATGATGAGTTTAGTGAGTTGTCTGAAACAAATGGCTCGCCCTACCCAGTGAATAGATTGCCCCTTCTGCCTAACTAG 1959 39.46 MLSISQHPLITLSKLKTQDFKFLLSKPRLHNHQKYPNKITYNTYGYRDRYRYNSCFCSKLDMVSFSSSEEEFDMELGRLLRLLPEEMRRKVTEHEELHQLIEVVMDLGRKPLARFPSGDFVLSDHLITVDDLEHATSLVGDFAIDNRAGISRTLHRISAIRNRKGAVIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDIARMLANEYNKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVQNPSLEMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRLELRVHSSLEATVDAILSGRSPRYQICKLNEGVIDDPLQSDSIAYDSFVKKSVDTIEGTTWNNEKLTPDRKISKESQSEIENSYDKPPLCLFLYGVSETSARHVFNHLKMDSAVEYTENISEADAILALLSKIKKNSRIQAAAHSNDIPIYVTKTSSMTQLTKAIEALLTDYDNDFEDIEDEYSQINESEKADALEEARIAIEQVVIPKGEPVELLPRPSNVMLLQKELIRKYKLQAQKVGSEADVRLRILPFQGLTEEKDHDDDVDDDEFSELSETNGSPYPVNRLPLLPN 652
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02208 652 FunFam uncharacterized protein ycf45 isoform X2 156 373 - -
Ecan3g02208 652 Coils Coil 529 549 - -
Ecan3g02208 652 MobiDBLite consensus disorder prediction 619 652 - -
Ecan3g02208 652 SMART AAA-5 191 322 IPR003593 GO:0016887(InterPro)
Ecan3g02208 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 335 IPR027417 -
Ecan3g02208 652 CDD R3H-AAA 553 612 IPR034081 -
Ecan3g02208 652 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 199 218 - -
Ecan3g02208 652 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 600 619 - -
Ecan3g02208 652 Gene3D - 172 374 IPR027417 -
Ecan3g02208 652 Pfam Sporulation stage III, protein AA 170 321 IPR045735 -
Ecan3g02208 652 CDD AAA 192 281 - -
Ecan3g02208 652 PANTHER KINASE-RELATED 70 575 - GO:0009507(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02208 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:24228373 Ecan3g02208 Ecan-Chr3:32908197 dispersed
Ecan Ecan-Chr2:38069280 Ecan3g02208 Ecan-Chr3:32908197 dispersed