AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02246 ATGAGAGGAGTGATTGGAAAGTATCCATCAAGTGATGGAAATGGAGAAGTTGGTAATGGAAATGGGGGTGTTATAAAATACAACAGAAAATGTAGAGATATTGTGTTTCTTGTTTTTTTCATAGCTTTTTGGATCTCCATGATTGTTAACTCAAGCTTTGGGTTTAACCAAGGAAACCCATTAAGGCTAAATTTTGGATTGGATTATAAAGGAAATGTATGTGGGGGAAAGCACAAAGATTTTGACCTTCATGAACTTGAACTAAAATATTATGTTAATCCTAACCAAGTTTACCAAAGTGGATTAAAGAACAGTGGAGTAAAACTGGCTAACACCAGATCAATATGCTTGTTGGATTGTCCAATACCATCAGAAGATTCTTTGAACTGGGTTTGTGATTATCCAGAGGGAGATATTCGTCTTTCTTTAGACGATTGGATCGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAACTACGAAACACATCTCTTCAACTTCAAGGCCCTTGCTACCCTGTCATTTTTCCAAGTGTAAATGTTTATTGGACTTGCCAGTTTATCGACCGTCCATCGAATGTGTCTTTAACACATTGGAAGCAAATGAATGGGGTTAACATCAATGATGATATGGTGATAGATAAGTCTATTCACAATTCTATCAACACACGATCATCTGTGTTGAAGAGATATGTGGCTGATGTGGGAAAGTCCTGGCCGGTGTTGATAGTTTGTGGAGGACTCCTGCCTCTGTTTCTATCATTGTTATGGCTTTTGATGATCCGACATTTTGTAGCTGGAATGCCATGGGTTACCGTCTTTCTATTTAATGGTCTCATAATATCAGTCACAATGTTTTACTACTTGAAAGCTGGATGGATTGGAAATGATGCTATCTCGCCCATCATTGGTGAACATGATCCGTACTATCATGTTTCTGCGAGGGAGCAACATCATATCCATGCTGCTGCTTTTCTCATGACTTGTGTGATGATTGTCTCCGTTTTATCATCTATAGCTATTGTTAGGCGGATTCTTATGGCAACTTCAGTTCTGAAGGTTGCAGCAAAGGTCATTGGAGAAGTTCATGCTCTTATAATATTCCCGATCATACCATACCTAATCCTTGCGGTCTTTTACATGTTTTGGTTATCTGCTGCTCTTCATCTTTTCAGTTCGGGTCAGGTAGTACGCAACGATTGCAGCTCAAACTGTTGTGCATATGATCTCAAAGCCAAACGGGTTACTTGTGATGACTGTTGTGGCTATAGCGTCCATTACACTCCTCATATCGCAGCTGGAATCCTATTCCACTTATTTGGATGCTACTGGGCCACTCAGTTTATCATCGCATGTTCTTCGACCGTGATTGCTGGTTCTGTAGCTTCGTATTATTGGACGCGTGGCGAATCTTCGAAAACGATTCCGTTTTTGCCTGTTTTCTCATCGATGAAGCTACTCATGCGTTATAGCCTGGGCTCTGTGGCAATTGGTTCTTTAATTGTATCTTTTGTTGAGTCAACTCGCTTCATACTTGAAGCCATACGCCGGAGATTAAAAGTTGCGGATATCTTGCCTGAAAGCTGGATTAAGAGAATGATGTTCTATACTTCTCGGTTTTGCGTGAAGGCTATTGAAGTGACCTTAAAATCTGTAAACCGCAATGCATACATTATGATTGCTATAACAGGAAAAGGGTTCTTTAGAGCTTCTGAAATGGCAACTGATTTGATAATCAGTAATATTCTTCGTATTGGGAAAGTGAATGTGATTGGGGATGTTATTCTGTTTCTTGGGAAGCTGTGTGTGAGTCTGGCTAGTGCACTTTTTGCGTTTCTTATGTTGGATACTCATAAGTACAAATCATCCCACAACAAGATCACATCCCCACTATTTCCTGTGCTGTTCTGTTGGGGCCTGGGATATATAGTGGCAACCCTTTTCTTTGCAGTGGTGGAAATGTCGATAGATACTATCATCCTCTCGTATTGCCAGGACACAGAGGAACACCAAGGGACTGCACATTATGCTCCTCCACTTTTGATCGAGACTTTTGATGATCAGAACGAGGTGCAAAGAATTGCACAATGA 2094 40.21 MRGVIGKYPSSDGNGEVGNGNGGVIKYNRKCRDIVFLVFFIAFWISMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFDLHELELKYYVNPNQVYQSGLKNSGVKLANTRSICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVNINDDMVIDKSIHNSINTRSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVAGMPWVTVFLFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIHAAAFLMTCVMIVSVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPIIPYLILAVFYMFWLSAALHLFSSGQVVRNDCSSNCCAYDLKAKRVTCDDCCGYSVHYTPHIAAGILFHLFGCYWATQFIIACSSTVIAGSVASYYWTRGESSKTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPESWIKRMMFYTSRFCVKAIEVTLKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLFCWGLGYIVATLFFAVVEMSIDTIILSYCQDTEEHQGTAHYAPPLLIETFDDQNEVQRIAQ 697
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02246 697 Pfam Plasma-membrane choline transporter 327 669 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Ecan3g02246 697 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 21 687 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02246 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:33328986 Ecan3g03949 Ecan-Chr3:46219818 wgd