AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02250 ATGGCAGCTCGGTTATTAGCATATGAGGTATCCGATCTTTGCCTTGGCAAACCTGCCCTCACCTCCCTCCCTATCTCCGCCTCCATCCACCACGCCTTAAACGCCCTCAAATCGTCTAACGACACCCACATCAGCATTTGGAACTGTGACCACAACCAGTCGGACACCACAAACGACGACCAACAACTCATCGACGAGTGTCGCTGTGTTGGAAAAATCTGCATGGCTGATATCATTTGTTATCTTTGCAAAGATGACAACATATCATTTCCTTCTACCGCACTCAAATCCCCTGTTTCGGTTTTGATGTCACATGTTAACGTTCCTTCCGTCGTGAAACATGTGGAACCGTCCTTTAGTTTGCTTGAAGCTATTGATCTTATTATTATTGATGGAGCTCAAAATCTTGTGGTGCCAATAAAAAATAAGACAAGTAAGAGAAAACAACTTCGACAATACCCAACAATCGCCCCGACCACCCATGATGGTGGTAGGGAATATTGTTGGGTCACGCAAGAGGACGTGATCAGGTTCCTTCTTAGCTCAATTGTTTTATTCTCACCAACGGCGGCTTACTCTATCGAGTCACTTGGTATCATCACAGCAGAGATCCTCACAATCAACTACCATTCTCCTGCATCAAAAGCAGCGGATGCCATTTCAAGCTCTCTAGCTGACCAAACTTCTGTTGCGGTTGTGGATGATGATGGTGTGTTAATAGGTGAAATCTCGCCTTTCACACTTAATCATTGTGACGAAATGGTCGCGGCTGCGATCACAACACTCTCCGCCGGTGATCTTATGGCCTACATAGATTGCGGTGGCCCACCCGAAGATATACTTCAGGTGGTGGAGACTAGGTTGAAAGAAAGGAACCTGGATGGAATGCTCGATTATTTGAAGAGCATTCTATACCATGACACCAATTCATCTTCTTCGGAAGATGAATTGTCATCCTCCCCGACCTCTACTGGGCCAGGGAGGTACAAAAGGTCAAACAGCTACTCTGCCCGAATAATGAGGAGGGCAGAGGCTATATTCTGTTACCCAAGTAGCTCATTGGTCGCCGTGATGATTCAAGCAATCACCCATCGCTTAAGTTACGTGTGGGTGATTGAAGATGATTGTAGTTTGGTCGGAATAGTCAGATTTTCAGGCATGTTGGAAGTTTTTCGGGAACATTTAGAGAGCATGATAAACTAA 1203 45.55 MAARLLAYEVSDLCLGKPALTSLPISASIHHALNALKSSNDTHISIWNCDHNQSDTTNDDQQLIDECRCVGKICMADIICYLCKDDNISFPSTALKSPVSVLMSHVNVPSVVKHVEPSFSLLEAIDLIIIDGAQNLVVPIKNKTSKRKQLRQYPTIAPTTHDGGREYCWVTQEDVIRFLLSSIVLFSPTAAYSIESLGIITAEILTINYHSPASKAADAISSSLADQTSVAVVDDDGVLIGEISPFTLNHCDEMVAAAITTLSAGDLMAYIDCGGPPEDILQVVETRLKERNLDGMLDYLKSILYHDTNSSSSEDELSSSPTSTGPGRYKRSNSYSARIMRRAEAIFCYPSSSLVAVMIQAITHRLSYVWVIEDDCSLVGIVRFSGMLEVFREHLESMIN 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02250 400 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 394 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Ecan3g02250 400 MobiDBLite consensus disorder prediction 309 331 - -
Ecan3g02250 400 SUPERFAMILY CBS-domain pair 5 181 IPR046342 -
Ecan3g02250 400 SUPERFAMILY CBS-domain pair 199 396 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02250 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84897 Ecan3g02250 Ecan4g00891
84898 Ecan3g02250 Ecan8g02386
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:33368024 Ecan4g00891 Ecan-Chr4:19656739 dispersed
Ecan Ecan-Chr3:33368024 Ecan3g03954 Ecan-Chr3:46251784 wgd
Ecan Ecan-Chr3:33368024 Ecan8g02386 Ecan-Chr8:35362484 wgd