AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02252 ATGGCTCTCCAAGCTACTTCTTTTTCTGTTAACAATCTCATGGCAAAAACTACTTCATTTTCGAAAGAGTCAACCCTCTTTGGGATTTCACTTTCTGACCACATGAAAGCTGATTCCACTTCATTAACATCAAGAAACAAGATGGAATGCACCTGCAAAAAAGTGTTTAGACCACAAGCCATAGCCACCACAAGTGCACCAGCCGTGACCCGAGCAGCACCAGAGGGAAAGAAGACATTGAGAAAAGGAAGTGTCATAATCACTGGAGCTTCATCCGGTTTGGGTCTAGCCACAGCTAAATCATTGGCAGAAACAGGGAAGTGGCACGTGATTATGGCATGTAGAGACTTTCTAAAAGCAGAAAGAGCAGCTAAATCAGCTGGAATGTCAAGAGACAATTACACCGTGATGCATTTAGACCTTGCATCAATGGACAGTGTACGACAATTCGTTGCCAACTTCAAGCAATCGGGTAGACCACTAGACGTATTAGTCTGCAATGCAGCCGTGTATCAACCAACAGCCAGAGAACCGACTTTTACAGCTGATGGAATCGAGCTAAGCGTTGGAACTAATCATCTTGGTCATTTCCTTCTTTCAAGATTATTACTTGATGACATGAAACAATCCGATTACCCTTCAAAAAGGCTCATTATCGTTGGGTCAATTACCGGAAACACTAACACTTTGGCAGGAAATGTACCACCTAAGGCTAGCTTAGGTGACATGAGGGGTTTAGCCGGTGGTTTGAATGGGTTAAATAGTTCAACCATGATTGATGGAGGAAAGTTTGATGGGGCAAAGGCATATAAAGATAGTAAGATATGTAACATGCTCACAATGCAAGAGTTTCATAGGAGATATCATGAAGAAACCGGAATTACATTTGCTTCTTTATACCCCGGTTGCATTGCTACCACTGGGTTGTTTAGAGAACACATTCCTCTTTTCCGAATGTTGTTTCCTCCATTCCAAAAGTTTATTACCAAAGGGTATGTCTCTGAAGCTGAATCTGGCAAACGACTTGCACAGGTTGTGAGTGATCCTAGCTTGACAAAGTCGGGTGTGTATTGGAGCTGGAACAAAGATTCGGCTTCGTTTGAGAATCAATTGTCGGAAGAAGCAAGTAATGAGAGCAAGGCTCGCAAGGTGTGGGAGATAAGCGAGAAGCTTGTGGGTTTGGCTTGA 1188 43.01 MALQATSFSVNNLMAKTTSFSKESTLFGISLSDHMKADSTSLTSRNKMECTCKKVFRPQAIATTSAPAVTRAAPEGKKTLRKGSVIITGASSGLGLATAKSLAETGKWHVIMACRDFLKAERAAKSAGMSRDNYTVMHLDLASMDSVRQFVANFKQSGRPLDVLVCNAAVYQPTAREPTFTADGIELSVGTNHLGHFLLSRLLLDDMKQSDYPSKRLIIVGSITGNTNTLAGNVPPKASLGDMRGLAGGLNGLNSSTMIDGGKFDGAKAYKDSKICNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRMLFPPFQKFITKGYVSEAESGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSEEASNESKARKVWEISEKLVGLA 395
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02252 395 NCBIfam protochlorophyllide reductase 81 395 IPR005979 GO:0016630(InterPro)
Ecan3g02252 395 PRINTS Glucose-ribitol dehydrogenase family signature 84 101 IPR002347 -
Ecan3g02252 395 PRINTS Glucose-ribitol dehydrogenase family signature 159 170 IPR002347 -
Ecan3g02252 395 PRINTS Glucose-ribitol dehydrogenase family signature 292 309 IPR002347 -
Ecan3g02252 395 Pfam short chain dehydrogenase 85 228 IPR002347 -
Ecan3g02252 395 CDD LPOR-like-SDR-c-like 82 394 - -
Ecan3g02252 395 Gene3D - 72 395 - -
Ecan3g02252 395 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 2 395 IPR005979 GO:0016630(InterPro)
Ecan3g02252 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 362 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02252 K00218 protochlorophyllide reductase [EC:1.3.1.33]
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Event-related genes

Select Gene_1 Gene_2 Event_name
84899 Ecan3g02252 Ecan8g02390
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:33377828 Ecan8g03244 Ecan-Chr8:42034841 dispersed
Ecan Ecan-Chr3:33377828 Ecan8g02390 Ecan-Chr8:35394138 wgd