AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02277 ATGACTCCTAAGCAAGTGACACTATTTGGTTCTGGATCTTTAGTAGCGATTACAGTTCTCTTATCTTTGAAGTTGTTTAAAGATCATCTTGCACATTGGAAGAAACCAAAGGAACAAAAGGCAATTCTAGTGATAATTCTCATGGCACCCATTTATGCTGTTGATTCTTATGTTGGATTGGTTGATATTCGTGGTAGTGAGACCTTTTTCTTGTTTTTAGACTCTATCAAAGAATGCTACGAGGGTTTGGTGATGGCTAAGTTCTTAGCTTTGCTGTACACTTACTTAAATATATCTATAAGCAAGAACATAGTCCCGGATGAGATCAAAGGAAGAGAGATCCACCACTCGTTCCCAATGACTCTCTTTCAACCTCACTCAGTTCGTTTGAACCATCAAAACTTGAAGCTCCTTAAATATTGGACATGGCAGTTTGTAGTGATTCGCCCTGTTTGCTCTGTTTTAATGATAGTTTTACAACTCCTTGAGATATATCCCGATTGGCTTAGCTGGACATTCACTATGATCTTGAATGTATCTGTTTCCTTGGCATTATATGCTCTTGTGGTTTTCTATCATGTATTCGCTAAAGAGTTAGCACCACATAAGCCTCTCGCCAAGTTCTTATGTGTCAAAGGAATCGTCTTCTTCTGTTTTTGGCAGGGAATTGTACTCAGTGGTCTCGTGTCAGTGGGCATAATCAAATCGAATCATTTTTGGCTTGATGTGTCACATATCCAACAAGCTCTGCAAAATGCATTGGTGATTGTGGAGATGGTGTTTTTCGCCATCTTTCAGATGTATGCATACACTGCTGCACCATACAAGGAGGCCGATGTGAAAGAGAAGAAGAAAGAGTGA 861 39.49 MTPKQVTLFGSGSLVAITVLLSLKLFKDHLAHWKKPKEQKAILVIILMAPIYAVDSYVGLVDIRGSETFFLFLDSIKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTFTMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGIVLSGLVSVGIIKSNHFWLDVSHIQQALQNALVIVEMVFFAIFQMYAYTAAPYKEADVKEKKKE 286
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02277 286 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 6 279 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Ecan3g02277 286 Pfam Organic solute transporter Ostalpha 9 275 IPR005178 -
Ecan3g02277 286 SMART Solute-trans-a-2 7 275 IPR005178 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02277 K14360 organic solute transporter subunit alpha
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:33572986 Ecan5g01781 Ecan-Chr5:31503220 dispersed
Ecan Ecan-Chr3:33572898 Ecan3g02277 Ecan-Chr3:33572986 tandem