AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02293 ATGTTCACCAAATTCATTTTCCGGCCATCACCCCCTTTTTCCATCGCCCTATCTCCTCCGTTGACCCCCACCATCTTCCACCACTCCACCGCCGTCACCTTCCGTCGCATCTCCGCCGCCACACCTCTTTTCACCACCCAACCGTACGGCCCCTCTTTATCCAAAGGCATAAACCCCATTTCAAAAACCCAACAAGAAACCAACAACCAAGATTCATTATCGAATTTCGACGAAGCCCACTTCACTCGGGTATACAACATCTCAGCTCTTAAAGTCAACGCAAGCCAATGCCATGTTTTAGAAAGTCAACTCCGTGGTCACTTGCTTAACTGGCCTAGAATTCGGAACATTGCGAGAGTACCCGGAGACGAAATAGACCCGGAATTGCAAAAGTATTTCGAGTCCGAAAAAGCGTTTAATGAGAACAGTTTAGATAGGAGGATTTATGGAAAGGGGGGAGGAGATGGGGAACGGTTGAGCCCGGTTTTGTATAGAGATAAGCTTGTTAAGAGTTTTGATTCAAGGGGTTTTGAAAAGTTTAGGAATTTGGCTAAGTTATCGAGACCGAAAAGGAATGGGAGAACGGAAAAGGAGACGAAAATGAGTCAAGGTAAAGAGAGTGGGAAGAATGAGTGTTATTTGGTGGAAGAGGTTTTTGAGGAAGATAGGGATGATAAGGAGGATTTGAGTCGGTTGATTGGAGACGAATATAGAGTTGGGAAGTGGAGAGGTTCGACAAGATTGTTGCTTTTGGATGAAGGGTATGCTGATAAGTCGATAGACGAGTTGCCTCAGGCGATTAAGGCTTGTTTAAAGGAATCATTATTTGAACTTGTGAGATGCAAGCTGACTTTGTTTTACACTTATTGGCAGATGAATGAGGTCTTAGAGGCTTTTCTTCCAAATGGCATGATTGTCCCTTCATCCTTTGAGACTGTTGGGCATATCATCCATTTGAACTTAAGAGACGAACACCTTCCATATAAGAAGATTATAGCAAAGCTTGAAGTTTTGGCTGGAAATCATTCCCTTGTGACGAAAGTAGTAGAGAATGGACTCCAATTTCATGTTGATTTAGCAGCAGTGTACTGGAGCTCAAAGTTGGGAACAGAGAGGCAAAGACTTCTGAATGGTTTTACACGAAGTGATGTTGTCTGTGACGTTTTTGCTGGGGTCGGTCCTTTAGCCATATCTGCAGCAAAAAAGGTTAAGCATGTGTATGCAAATGATTTAAATCCCCATGCAGTTGACTACATGGAAAGAAATTGTGTGCTCAACAAACTAGAAAGAAAGATTGAGGTTTTCAACATGGATGGCAGAAGATTCATTGATGCCATCTTTAAGAGTCAAAGCACCCGGCCCATCACACAAGTCGTCATGAATCTGCCCAAGGATGCAGCTGAGTATCTTGATGCATTCAAAGGAATATTCAGAGATCTTGACAGGAAAGAAGAGTTAACCTTGCCAAATATTCATGTCTATGGATTTTCCAAAGCTGAAGATCCTGAGTTCGAGTTTCATGAGCGGATAAGAATTGCATTGTCGGAGGTGGCCTTTGAAGTTAAAATGCATAAAGTGCGTCTTGTCGCCCCCGGAAAATGGATGTTATGTGCATCATTTGTTCTTCCTGAGAGGGTGGCATTTGCGAGCTCGATTTCAGAATTATAA 1668 43.11 MFTKFIFRPSPPFSIALSPPLTPTIFHHSTAVTFRRISAATPLFTTQPYGPSLSKGINPISKTQQETNNQDSLSNFDEAHFTRVYNISALKVNASQCHVLESQLRGHLLNWPRIRNIARVPGDEIDPELQKYFESEKAFNENSLDRRIYGKGGGDGERLSPVLYRDKLVKSFDSRGFEKFRNLAKLSRPKRNGRTEKETKMSQGKESGKNECYLVEEVFEEDRDDKEDLSRLIGDEYRVGKWRGSTRLLLLDEGYADKSIDELPQAIKACLKESLFELVRCKLTLFYTYWQMNEVLEAFLPNGMIVPSSFETVGHIIHLNLRDEHLPYKKIIAKLEVLAGNHSLVTKVVENGLQFHVDLAAVYWSSKLGTERQRLLNGFTRSDVVCDVFAGVGPLAISAAKKVKHVYANDLNPHAVDYMERNCVLNKLERKIEVFNMDGRRFIDAIFKSQSTRPITQVVMNLPKDAAEYLDAFKGIFRDLDRKEELTLPNIHVYGFSKAEDPEFEFHERIRIALSEVAFEVKMHKVRLVAPGKWMLCASFVLPERVAFASSISEL 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02293 555 Pfam Met-10+ like-protein 334 479 IPR030382 -
Ecan3g02293 555 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 306 544 IPR029063 -
Ecan3g02293 555 PANTHER TRNA METHYLTRANSFERASE 87 547 - GO:0002939(PANTHER)|GO:0005737(PANTHER)|GO:0008175(PANTHER)|GO:0009019(PANTHER)|GO:0030488(PANTHER)
Ecan3g02293 555 MobiDBLite consensus disorder prediction 188 207 - -
Ecan3g02293 555 Gene3D Vaccinia Virus protein VP39 350 542 IPR029063 -
Ecan3g02293 555 ProSiteProfiles SAM-dependent methyltransferase TRM5-TYW2-type domain profile. 276 544 IPR030382 -
Ecan3g02293 555 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 73 544 IPR025792 GO:0030488(InterPro)|GO:0052906(InterPro)
Ecan3g02293 555 CDD AdoMet-MTases 385 449 - -
Ecan3g02293 555 Gene3D - 289 349 - -
Ecan3g02293 555 FunFam tRNA (guanine(37)-N1)-methyltransferase 345 542 - -
Ecan3g02293 555 FunFam tRNA (guanine(37)-N1)-methyltransferase 292 356 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02293 K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:33687801 Ecan4g02890 Ecan-Chr4:38236946 dispersed
Ecan Ecan-Chr3:33687801 Ecan3g02293 Ecan-Chr3:33687801 tandem