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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02331 ATGGCATTTTTACGGCACACCATAATAACAATAACAAACCTCATTTTACTATACACCATAATCTTGTCACCATTTCCACAAACACAATCTCAATCTGTGACAGAATCATCAATCCATGATCTTCTCAAAAGCAAAGGCTTACCAGTTGGGTTATTCCCAAAAGAAGTTGAATCATTCACACTCTATGATACAGGTTTGCTTGAAGTGTTTCTTAGAGGACCATGTTTAACAAAATTTGACACTATGGCATTTTATGAAAGTACTGTTAGAGCTAATTTGACATATGGTAGTCTTACTAATGTTGAAGGGCTGTCTCAAGAAGAATTGTTTCTTTGGTTGCCTGTAAAAGACATCATTGTTGATGATCCTAAATCTGGTCTTATTTTGTTTGACATTGGTTTGGCACATAAACAGCTGTCTCTTTCTTTGTTTGAAGATCCTCCTGACTGTAAAACTGAAGAAGATGTTGTTTTGAATTTGAAGAAAAAATCTAGAAAGGAGATCGGATTTAATGCTCAAATGTAG 525 34.67 MAFLRHTIITITNLILLYTIILSPFPQTQSQSVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTNVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKTEEDVVLNLKKKSRKEIGFNAQM 174
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02331 174 Gene3D - 27 156 IPR036758 -
Ecan3g02331 174 PANTHER T31J12.3 PROTEIN-RELATED 29 151 IPR007493 -
Ecan3g02331 174 SUPERFAMILY At5g01610-like 14 152 IPR036758 -
Ecan3g02331 174 Pfam Protein of unknown function, DUF538 38 145 IPR007493 -
Ecan3g02331 174 FunFam Uncharacterized protein At3g07460 28 155 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02331 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2107903 Ecan Ecan3g02331 Ecan-Chr3:33989783 Ecan9g00613 Ecan-Chr9:5196455
2126826 Ecan Ecan3g02330 Ecan-Chr3:33989783 Ecan3g02331 Ecan-Chr3:33989783