AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02340 ATGGGCTCAGAACAATATGGTTATAGATTGACTGGTCAAGGATCATCTTACCCTACTTTTCAATCACAAGCTCCCTTGGTTCCCACAAGACTAATTGAATCCTTAAAGTTTGAGACCCGAGACTCTCCTAATTCGCCTTTCGTAAACCCGTTTGATTCAGAGACATTCACCACATTGAGCTCAGGTGCTAGTCCTTCTTCCCTTGAAGATTGCAGCTCTTTAAACCAGTCGAGCTTGTCTACCTTTGTGCATAGTGGCGGTATTCATTACATGAAAAATGCTCTTCAGGATATAGAGACTACCCTAATGGCACCAGATGAGGAAGTATCCATGCCACCCTTGAATCCTCCTATCAGTCAATGGCAGCAACAGTGGACACATGCACCCTCTGGTTCAAATATGGTGCAACCGCAGGCTGTATATAGTCCAAGATACAGTCCATCCTCTGGTACTAATCATACTAATAATATAAAGCAGTTACTTATTGCATGTGCGAGTGCTCTTGCTGGAAACAAGCTTGATGAATTTGAAAAATTAGTCGTACATGCACGGGCTTCTGTGTCTATTAGTGGCGACCCGATCCAGAGGCTTTGTGCGTATATTGTGGAGGGGTTGGTGGCAAGGCGGGAATTATCCGGGAATAATATTTATCGAGCTTTAAAGTGTCGGGAACCCGAAGGGAAAGATCTACTTTCTTACATGCATATCCTATACGAAATATGCCCTTACTTGAAATTCGGGTACATGGCTGCGAATGGAGCTATAGCAGAAGCTTGCAGAAATGAAGACCGAATCCACATAATTGACTTTCAAATAGCTCAAGGTACACAATGGATAACTCTTTTACAAGCACTTGCTGCTAGACCAGGGGGGCCACCTCATGTTCGTATCACAGGAATTGACGATCCCGTCTCAAAGTACGCCCGTGGAGACAGTTTAGAGTTAGTTGGGAAAAGGTTAGAAGCTGTCTCACAGAAATTTAACATCCCGGTAGAGTTTCAACCACTACCGTTTTACGCCCCATTTGTGACCAAACAAATGCTTGATGTGAGACCTGGTGAGGCCCTGGCGGTTAACTTTGCACTTCAACTACACCACATGCCTGATGAAAGTGTTGATGTGAATAACCCGAGAGATGAGCGGCTTAGGATGGTGAAGTCACTTTCACCAAAAGTGGTTACATTGGTTGAGCAAGAATCAAACACAAACACAGCTGCATTTTTTCCGAGGTTCTTGGAAGTTCTCGACTACTATTCTGCAATGTTCGAGTCAATGGACGCAACTTTGGCACGAGATAGAAAAGAAAGGATAAATGTGGAACAACACTGTTTGGCTCGAGACATAGTCAACATAATTGCCTGTGAGGGTAAGGAAAGAATAGAAAGACATGAGCTTTTCCGGAAATGGAGGTCTAGGTTAACAATGGCAGGTTTTTCGCAGTACCCGTTGAGTACATACGTAAATTCTGTCATCAGGAATTTGCTGAAGTGTTACTCGGAGCATTATACTTTGGTCGAGAAAGATGGAGCTATGCTGTTGGGATGGAAAGATAGAAATCTAATATCAGCATCTGCTTGGCATTGA 1584 43.56 MGSEQYGYRLTGQGSSYPTFQSQAPLVPTRLIESLKFETRDSPNSPFVNPFDSETFTTLSSGASPSSLEDCSSLNQSSLSTFVHSGGIHYMKNALQDIETTLMAPDEEVSMPPLNPPISQWQQQWTHAPSGSNMVQPQAVYSPRYSPSSGTNHTNNIKQLLIACASALAGNKLDEFEKLVVHARASVSISGDPIQRLCAYIVEGLVARRELSGNNIYRALKCREPEGKDLLSYMHILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWITLLQALAARPGGPPHVRITGIDDPVSKYARGDSLELVGKRLEAVSQKFNIPVEFQPLPFYAPFVTKQMLDVRPGEALAVNFALQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLVEQESNTNTAAFFPRFLEVLDYYSAMFESMDATLARDRKERINVEQHCLARDIVNIIACEGKERIERHELFRKWRSRLTMAGFSQYPLSTYVNSVIRNLLKCYSEHYTLVEKDGAMLLGWKDRNLISASAWH 527
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02340 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 136 526 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Ecan3g02340 527 ProSiteProfiles GRAS family profile. 148 527 IPR005202 -
Ecan3g02340 527 Pfam GRAS domain family 158 526 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02340 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2099212 Ecan Ecan1g00319 Ecan-Chr1:4376368 Ecan3g02340 Ecan-Chr3:34045475
2107908 Ecan Ecan3g02340 Ecan-Chr3:34045475 Ecan8g02362 Ecan-Chr8:35179586
2126830 Ecan Ecan3g02340 Ecan-Chr3:34045475 Ecan3g02341 Ecan-Chr3:34045475
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ecan8g00491 . 1 583 GRAS Transcription Factor family AT5G66770 51.329 0.0 522.0
Ecan8g00332 . 12 409 GRAS Transcription Factor family AT3G49950 61.337 0.0 523.0
Ecan8g00360 . 1 529 GRAS Transcription Factor family AT4G37650 56.856 0.0 549.0
Ecan8g02364 . 43 490 GRAS Transcription Factor family AT5G48150 67.035 0.0 615.0
Ecan8g02363 . 43 490 GRAS Transcription Factor family AT5G48150 67.035 0.0 615.0
Ecan8g02362 . 43 490 GRAS Transcription Factor family AT5G48150 67.035 0.0 615.0
Ecan9g01032 . 248 651 GRAS Transcription Factor family AT3G54220 80.723 0.0 656.0
Ecan1g03669 . 1 656 GRAS Transcription Factor family AT1G63100 50.297 0.0 569.0
Ecan1g01633 . 87 767 GRAS Transcription Factor family AT1G07530 45.297 0.0 550.0
Ecan9g00038 . 31 713 GRAS Transcription Factor family AT2G37650 50.568 0.0 639.0
Ecan9g00411 . 86 767 GRAS Transcription Factor family AT1G07530 48.93 0.0 631.0
Ecan9g00772 . 282 650 GRAS Transcription Factor family AT3G54220 55.645 1.12e-142 422.0
Ecan1g03802 . 167 555 GRAS Transcription Factor family AT4G00150 45.113 1.83e-102 321.0
Ecan1g03803 . 167 555 GRAS Transcription Factor family AT4G00150 45.113 1.83e-102 321.0
Ecan9g01559 . 1 481 GRAS Transcription Factor family AT1G50420 60.707 0.0 576.0
Ecan1g03875 . 296 547 GRAS Transcription Factor family AT3G03450 31.102 7.75e-38 137.0
Ecan2g01167 . 177 544 GRAS Transcription Factor family AT3G03450 33.25 1.10e-55 193.0
Ecan2g03456 . 165 529 GRAS Transcription Factor family AT1G14920 33.766 3.11e-66 223.0
Ecan2g02695 ACH 28 484 GRAS Transcription Factor family AT4G36710 47.346 2.34e-130 386.0
Ecan2g02305 . 24 478 GRAS Transcription Factor family AT1G50420 37.691 4.63e-107 322.0
Ecan1g03879 . 358 547 GRAS Transcription Factor family AT3G03450 31.414 4.17e-31 116.0
Ecan2g03929 ACH 1 510 GRAS Transcription Factor family AT3G13840 47.955 6.14e-152 444.0
Ecan2g00720 . 144 507 GRAS Transcription Factor family AT1G66350 44.444 1.17e-100 316.0
Ecan3g00145 . 40 444 GRAS Transcription Factor family AT1G55580 44.656 1.35e-107 323.0
Ecan3g00310 . 86 767 GRAS Transcription Factor family AT1G07530 48.927 0.0 608.0
Ecan3g03279 ACH 84 555 GRAS Transcription Factor family AT4G00150 48.325 1.19e-157 465.0
Ecan3g00018 . 157 597 GRAS Transcription Factor family AT1G50600 61.261 0.0 556.0
Ecan3g02048 . 41 490 GRAS Transcription Factor family AT5G48150 60.613 0.0 560.0
Ecan3g02340 . 19 489 GRAS Transcription Factor family AT5G48150 51.703 4.05e-175 501.0
Ecan3g02341 . 19 489 GRAS Transcription Factor family AT5G48150 51.703 4.05e-175 501.0
Ecan3g00307 . 86 767 GRAS Transcription Factor family AT1G07530 46.0 0.0 566.0
Ecan3g00308 . 86 767 GRAS Transcription Factor family AT1G07530 46.0 0.0 566.0
Ecan3g00201 . 84 545 GRAS Transcription Factor family AT3G03450 31.902 1.46e-62 212.0
Ecan3g02685 . 73 717 GRAS Transcription Factor family AT2G37650 54.613 0.0 670.0
Ecan1g03877 . 346 547 GRAS Transcription Factor family AT3G03450 30.049 8.93e-31 115.0
Ecan1g03880 . 178 307 GRAS Transcription Factor family AT3G03450 26.471 6.99e-11 60.8
Ecan1g03881 . 211 583 GRAS Transcription Factor family AT2G01570 28.244 3.93e-57 198.0
Ecan1g03882 . 178 547 GRAS Transcription Factor family AT3G03450 29.474 2.52e-50 179.0
Ecan1g03883 . 144 505 GRAS Transcription Factor family AT1G66350 30.263 4.06e-53 186.0
Ecan4g02123 . 209 582 GRAS Transcription Factor family AT2G01570 64.103 1.50e-173 507.0
Ecan4g02635 . 34 490 GRAS Transcription Factor family AT5G48150 65.665 0.0 614.0
Ecan4g00626 . 1 525 GRAS Transcription Factor family AT4G17230 52.236 0.0 545.0
Ecan4g02907 . 27 529 GRAS Transcription Factor family AT1G14920 48.555 4.94e-161 467.0
Ecan4g02076 . 30 405 GRAS Transcription Factor family AT5G41920 68.407 0.0 514.0
Ecan4g02075 . 30 405 GRAS Transcription Factor family AT5G41920 63.708 3.83e-164 465.0
Ecan4g02525 . 150 507 GRAS Transcription Factor family AT1G66350 30.026 1.77e-55 192.0
Ecan4g02526 . 139 507 GRAS Transcription Factor family AT1G66350 28.389 7.61e-52 182.0
Ecan4g03460 ACH 2 510 GRAS Transcription Factor family AT3G13840 44.762 4.06e-146 428.0
Ecan4g01977 . 13 530 GRAS Transcription Factor family AT1G14920 59.025 0.0 630.0
Ecan1g02667 . 28 582 GRAS Transcription Factor family AT2G01570 62.937 0.0 689.0
Ecan5g03296 ACH 140 555 GRAS Transcription Factor family AT4G00150 51.708 3.21e-135 407.0
Ecan5g02999 . 141 530 GRAS Transcription Factor family AT4G37650 54.975 1.45e-142 415.0
Ecan5g01993 . 40 444 GRAS Transcription Factor family AT1G55580 48.687 3.29e-121 357.0
Ecan6g01877 ACH 27 486 GRAS Transcription Factor family AT4G36710 47.034 4.65e-135 398.0
Ecan6g03181 . 86 766 GRAS Transcription Factor family AT1G07530 45.138 0.0 563.0
Ecan6g03182 . 86 766 GRAS Transcription Factor family AT1G07530 45.138 0.0 563.0
Ecan6g01525 . 30 583 GRAS Transcription Factor family AT2G01570 60.522 0.0 667.0
Ecan1g00319 . 18 593 GRAS Transcription Factor family AT1G21450 54.545 0.0 582.0
Ecan6g00592 . 4 482 GRAS Transcription Factor family AT1G50420 61.443 0.0 590.0
Ecan6g03603 ACH 29 640 GRAS Transcription Factor family AT5G52510 40.958 1.45e-123 377.0
Ecan7g01855 . 20 766 GRAS Transcription Factor family AT1G07530 46.367 0.0 612.0
Ecan7g01853 . 61 600 GRAS Transcription Factor family AT5G59450 44.809 5.46e-162 475.0
Ecan1g01298 ACH 32 640 GRAS Transcription Factor family AT5G52510 42.121 5.87e-131 398.0
Ecan7g01237 . 141 516 GRAS Transcription Factor family AT5G17490 33.58 2.64e-52 182.0
Ecan7g01854 . 360 768 GRAS Transcription Factor family AT1G07530 49.282 5.72e-146 435.0
Ecan7g02841 . 154 444 GRAS Transcription Factor family AT1G55580 25.743 4.84e-18 84.0
Ecan7g02842 . 258 544 GRAS Transcription Factor family AT3G03450 25.753 3.36e-18 85.5
Ecan7g02843 . 150 516 GRAS Transcription Factor family AT5G17490 24.378 1.07e-18 87.0
Ecan7g02844 . 242 584 GRAS Transcription Factor family AT5G66770 25.284 8.86e-15 74.7
Ecan8g02238 . 161 529 GRAS Transcription Factor family AT1G14920 35.219 3.30e-72 238.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ecan GRAS 2.3e-132 CL0063 TF GRAS